Effect of substrate charge density on the adsorption of intrinsically disordered protein amyloid β40: a molecular dynamics study.

The inhibitory effect of negatively charged gold nanoparticles (AuNPs) on amyloidogenic protein fibrillation has been established from experiments and computer simulations. Here, we investigate the effect of the charge density () of gold (Au) surfaces on the adsorption of the intrinsically disordered amyloid β40 (Aβ40) monomer using molecular dynamics (MD) simulations. On the basis of the binding free energy, some key residues (ARG5, LYS16, LYS28, LEU17-ALA21, ILE31-VAL38) were found to be responsible for preventing the β-sheet formation, which is known to be a precursor for fibrillation.

Self-assembly of a CTAB surfactant on gold nanoparticles: a united-atom molecular dynamics study.

Self-assembly of a cetyltrimethyl ammonium bromide (CTAB) surfactant on gold nanoparticles (AuNPs) is studied using united-atom molecular dynamics (MD) simulations. For AuNPs in the size range of 1-3 nm, CTAB self-assembles such that the tail groups adsorb on the AuNP surface while the ionic head group is exposed to water, giving a net negative charge to the AuNPs. Near the AuNP surface, water molecules are depleted.