Publications by authors named "E Myasnikova"

Recent computational modeling of early fruit fly () development has characterized the degree to which gene regulation networks can be robust to natural variability. In the first few hours of development, broad spatial gradients of maternally derived transcription factors activate embryonic gap genes. These gap patterns determine the subsequent segmented insect body plan through pair-rule gene expression.

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Structurally and functionally isolated domains in biological macromolecular evolution, both natural and artificial, are largely similar to "schemata", building blocks (BBs), in evolutionary computation (EC). The problem of preserving in subsequent evolutionary searches the already found domains / BBs is well known and quite relevant in biology as well as in EC. Both biology and EC are seeing parallel and independent development of several approaches to identifying and preserving previously identified domains / BBs.

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Article Synopsis
  • Evolutionary computing (EC) is a field focused on optimization algorithms that mimic the principles of natural evolution, leading to the creation of more efficient solutions than traditional methods.
  • EC approaches are seen as particularly useful for enhancing synthetic biology and biotechnology experiments, like in vitro evolution, where biological macromolecules are directed to evolve.
  • The study extends John Holland's evolutionary search concepts by applying a new fitness function, known as Biological Royal Staircase (BioRS), which is designed to work effectively in identifying and preserving beneficial traits during experimental evolutionary searches.
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Fifteen hypermucoviscous isolates (13 bla-positive) obtained from 11 oncology patients were analyzed by whole genome sequencing, and selected isolates were assessed in a murine model of sepsis. ST395/K2 isolates harboring rmpA, rmpA2, peg-344, aerobactin, enterobactin, yersiniabactin, type I fimbriae, etc. displayed maximal virulence in the mouse lethality assay (LD = 10 CFU).

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