Publications by authors named "Do-Yeon Kim"

Early tumor recurrence in hepatocellular carcinoma (HCC) remains a challenging area, as the mechanisms involved are not fully understood. While microvascular invasion is linked to early recurrence, established biomarkers for diagnosis and prognostication are lacking. In this study, our objective was to identify DNA methylation sites that can predict the outcomes of liver cancer patients and elucidate the molecular mechanisms driving HCC aggressiveness.

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Parkinson's disease (PD) is a neurodegenerative disorder triggered by the loss of dopaminergic neurons in the substantia nigra (SN). Recent studies have demonstrated that necroptosis is involved in dopaminergic neuronal cell death and the resulting neuroinflammation. During the process of necroptosis, a necrosome complex is formed consisting of the proteins receptor-interacting protein kinase 1 (RIPK1), RIPK3, and mixed lineage kinase domain-like protein (MLKL).

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  • This study investigates the outcomes of rapid-deployment aortic valve replacement (RD AVR) in patients with bicuspid aortic valves (BAV) compared to those with tricuspid aortic valves (TAV), aiming to fill the gap in existing research.
  • The analysis included 80 patients, with 30 undergoing RD AVR; 16 had TAV and 14 had BAV, allowing for a thorough comparison of preoperative and postoperative outcomes.
  • Results showed significant differences in postoperative pressure gradients favoring the BAV group, with no severe complications reported, although one BAV patient required a pacemaker, indicating generally good safety and feasibility for BAV patients undergoing RD AVR.
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Haplotype-level allelic characterization facilitates research on the functional, evolutionary and breeding-related features of extremely large and complex plant genomes. We report a 21.7-Gb chromosome-level haplotype-resolved assembly in Pinus densiflora.

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  • - The gut microbiome is a diverse collection of microorganisms in the human intestine that plays a crucial role in overall health, with imbalances linked to various health issues like gastrointestinal and metabolic disorders.
  • - Fecal microbiota transplantation (FMT) and live biotherapeutic products (LBPs) are promising treatments aimed at restoring gut microbial balance and addressing related health problems.
  • - The review emphasizes the importance of standardization, safety, and long-term studies to improve the clinical use of FMT and LBPs for better health outcomes.
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  • Scholars have been studying the stigma linked to sexual violence (SV) and its potential impact on mental health issues like anxiety and depression.
  • A scoping review of 62 studies showed that SV is widely considered a stigmatized condition by both perpetrators and survivors, with evidence supporting this perception.
  • The review also highlighted various negative psychosocial effects associated with SV stigma, while pointing out gaps in the research, such as inconsistent measurement of stigma and a lack of consideration for additional stigma-related concepts.
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Melanogenesis, a natural responsive mechanism of human skin to harmful radiation, is a self-triggered defensive neural activity safeguarding the body from radiation exposure in advance. With the increasing significance of radiation shielding in diverse medical health care and wearable applications, a biomimetic neuromorphic optoelectronic system with adaptive radiation shielding capability is often needed. Here, we demonstrate a transparent and flexible metal oxide-based photovoltaic neuromorphic defensive system.

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Background/aim: Given the high frequency and mortality rate of lung cancer, diverse molecular studies have been undertaken to understand cancer pathophysiology and develop novel treatment strategies. The PDIA4 gene, which is involved in protein assembly and endoplasmic reticulum homeostasis, is overexpressed in various lung cancer subtypes. However, its exact function in lung adenocarcinoma (LUAD) remains elusive.

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  • - Oral lichen planus (OLP) is a chronic inflammatory condition driven by cytotoxic T cell activity that leads to the death of skin cells called keratinocytes, though its exact causes remain unclear.
  • - The oral microbiome, containing a vast number of bacteria, produces extracellular vesicles (EVs) that may influence how OLP develops, but their specific effects are not fully understood.
  • - Research shows that OLP lesions have heightened inflammation and activated STAT3 signaling, with EVs from certain harmful bacteria triggering inflammatory responses similar to OLP symptoms, suggesting that these EVs could play a key role in OLP's development.
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  • MltG is a crucial enzyme in bacteria that helps control the structure of their cell walls by managing the growth and integration of peptidoglycan chains.
  • This research presents the first structure of MltG from the antibiotic-resistant superbug Mycobacterium abscessus, revealing its flexible binding domain and monomeric nature.
  • The findings enhance our understanding of the enzyme's function, which could assist in developing new antibiotics specifically targeting M. abscessus.
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Despite its numerous advantages, the aerobic granular sludge (AGS) process faces several challenges that hinder its widespread implementation. One such challenge is the requirement for high organic load ratios (OLR), which significantly impacts AGS formation and stability, posing a barrier to commercialization. In response to these challenges, this study investigates the granulation and treatment efficacy of the AGS process for treating high-concentration wastewater under various OLR and settling time.

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This report presents the latest statistics on the stroke population in South Korea, sourced from the Clinical Research Collaborations for Stroke in Korea-National Institute for Health (CRCS-K-NIH), a comprehensive, nationwide, multicenter stroke registry. The Korean cohort, unlike western populations, shows a male-to-female ratio of 1.5, attributed to lower risk factors in Korean women.

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  • - The CRISPR-Cas systems act as an immune defense in bacteria and archaea to protect against viruses and mobile genetic elements, with Type I systems being the most common and reliant on a complex called Cascade for target degradation.
  • - Recent research revealed the structure of Type I-C Cas3 from Neisseria lactamica (NlaCas3) in conjunction with Cascade, providing insights into how this complex activates the Cas3 enzyme to perform its function.
  • - Structural analysis of NlaCas3 showed its active site is bound to Fe2+ ions that inhibit activity, but it can cleave DNA effectively when exposed to Ni2+ and Mg2+, offering a deeper understanding of how Cas3 transitions from inactive to active states
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Parkinson's disease (PD) is a complex neurodegenerative disorder marked by the gradual deterioration of dopaminergic neurons, especially in the substantia nigra pars compacta (SNc). Dysregulation of the transcription factor FoxO1 is associated with various neurodegenerative conditions, including Alzheimer's disease and PD, though the specific mechanisms involved are not fully understood. This study explores the effects of α-Synuclein preformed fibrils (PFF) on BV-2 microglial cells, focusing on changes in molecular characteristics and their impact on neuronal degeneration.

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Microglia are primarily involved in inflammatory reactions and oxidative stress in the brain; as such reducing microglial activation has been proposed as a potential therapeutic strategy for neurodegenerative disorders. Herein, we investigated the anti-inflammatory and antioxidant activities of coniferaldehyde (CFA), a naturally occurring cinnamaldehyde derivative, on activated microglia to evaluate its therapeutic potential. CFA inhibited the production of nitric oxide (NO) and proinflammatory cytokines, such as tumor necrosis factor-α, interleukin (IL)-1β, and IL-6, in lipopolysaccharide (LPS)-stimulated BV2 microglial cells.

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Background: Surgical treatment for Freiberg disease (also known as avascular necrosis of the metatarsal head) has not been completely defined. This retrospective study evaluated short-term outcomes after arthroscopic treatment of Freiberg disease.

Methods: From 2015 to 2019, 13 patients (15 feet) diagnosed as having Freiberg disease were enrolled for arthroscopic surgery.

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Background: This study investigated the impacts of exercise on irisin and fibroblast growth factor 21 (FGF-21) expression, as well as triiodothyronine (T3 ) and free fatty acid (FFA) levels in elderly women.

Methods: Thirty women aged 65 to 70 years (10 per group) were randomly assigned to aquatic exercise, land exercise, and control groups. The aquatic and land groups engaged in 3 exercise sessions per week (60 min/session) for 16 weeks.

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Background: The occurrence of type II endoleaks after endovascular repair of aortic aneurysm has gradually gained increasing attention. We present a case of a patient with an expanding aneurysm after thoracic endovascular aortic repair (TEVAR) for a type II endoleak, in which successful direct ligations of the intercostal artery were performed using a sac incision without cardiopulmonary bypass (CPB) or graft replacement.

Case Presentation: A 62-year-old male patient, previously treated with TEVAR for a descending thoracic aortic aneurysm, presented with ongoing chest discomfort.

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Given that the skin is the largest tissue in the human body, performing external barrier functions with innate and adaptive immunity and undergoing substantial changes during aging, it is under investigation as a major target of various bioactive molecules. In the present study, we examined the biological activity of the senolytic piperlongumine by analyzing alterations in mRNA expression of notable skin genes using transformed aneuploid immortal epidermal keratinocytes, HaCaT cells. We observed that piperlongumine increased the mRNA expression of genes playing critical roles in skin barrier function.

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A novel virus infecting Stellaria aquatica plants, tentatively named "Stellaria aquatica virus C" (StAVC), was identified in Gangwon-do Province, South Korea. Its monopartite genome consists of a single-stranded RNA of 15,024 nucleotides, and it shares 38.24 to 56.

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 The greater the viscosity of the blood, the more difficult its flow becomes, leading to an increased incidence of diseases caused by blood circulation disorders. These diseases are commonly associated with the cardiovascular and cerebrovascular systems. High blood viscosity is a primary cause of circulatory system diseases.

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Background: This study aims to illuminate regional disparities and identify vulnerable areas in stroke care across Gyeonggi Province's hospital service areas.

Methods: Using data from the Korea National Cardio-cerebrovascular Disease Management Commission, we included 4,427 acute stroke patients admitted in 2018 to hospitals within Gyeonggi Province. Our evaluation focused on: 1) stroke care quality indicators, including rates of defect-free care, intravenous thrombolysis (IVT), endovascular thrombectomy (EVT), and acute reperfusion therapy (either IVT or EVT); 2) intra-regional treatment rates; and 3) one-year mortality across the province and its 12 hospital service areas.

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Pre-eclampsia (PE) is a hypertensive disorder characterised by systemic vascular resistance and endothelial dysfunction. It is known to influence choroidal thickness (CT). No previous studies have explored the antepartum and postpartum changes in CT with respect to the protein-creatinine ratio (PCR), a measure of proteinuria that is a clinical hallmark of PE.

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