Publications by authors named "Dineshkumar S"

Pathogenic bacteria use Type 3 effector proteins to manipulate host defenses and alter metabolism to favor their survival and spread. The non-model bacterial pathogen pv. () causes devastating disease in cassava.

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Reactive oxygen species (ROS) are among the most important signaling molecules, playing a significant role in plant growth, development, and responses to various environmental stresses. Respiratory burst oxidase homologs (RBOHs) are key enzymes in ROS production. Plants tightly regulate the activation and deactivation of RBOHs through various post-translational modifications (PTMs), including phosphorylation, ubiquitination, S-nitrosylation, and persulfidation.

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Chloroplast Unusual Positioning 1 (CHUP1) plays an important role in the chloroplast avoidance and accumulation responses in mesophyll cells. In epidermal cells, prior research showed silencing CHUP1-induced chloroplast stromules and amplified effector-triggered immunity (ETI); however, the underlying mechanisms remain largely unknown. CHUP1 has a dual function in anchoring chloroplasts and recruiting chloroplast-associated actin (cp-actin) filaments for blue light-induced movement.

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Phytohormone levels are regulated through specialized enzymes, participating not only in their biosynthesis but also in post-signaling processes for signal inactivation and cue depletion. Arabidopsis thaliana (At) carboxylesterase 15 (CXE15) and carboxylesterase 20 (CXE20) have been shown to deplete strigolactones (SLs) that coordinate various growth and developmental processes and function as signaling molecules in the rhizosphere. Here, we elucidate the X-ray crystal structures of AtCXE15 (both apo and SL intermediate bound) and AtCXE20, revealing insights into the mechanisms of SL binding and catabolism.

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Article Synopsis
  • SGT1 is a key protein in both plants and animals, crucial for their growth, development, and immune responses, acting as a co-chaperone to stabilize immune receptor complexes.
  • This study utilized advanced labeling techniques in the plant Nicotiana benthamiana to investigate the interactions of SGT1, revealing a significant shift from proteins related to growth to those involved in immunity during activation.
  • The findings highlight how SGT1 interacts with NSL1, a negative regulator of an immune response, and facilitates its degradation to enhance plant immunity, uncovering a new signaling pathway in plant defense mechanisms.
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Autophagy in eukaryotes functions to maintain homeostasis by degradation and recycling of long-lived and unwanted cellular materials. Autophagy plays important roles in pathogenicity of various fungal pathogens, suggesting that autophagy is a novel target for development of antifungal compounds. Here, we describe bioluminescence resonance energy transfer (BRET)-based high-throughput screening (HTS) strategy to identify compounds that inhibit fungal ATG4 cysteine protease-mediated cleavage of ATG8 that is critical for autophagosome formation.

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Plant innate immunity mediated by the nucleotide-binding leucine-rich repeat (NLR) class of immune receptors plays an important role in defense against various pathogens. Although key biochemical events involving NLR activation and signaling have been recently uncovered, we know very little about the transcriptional regulation of NLRs and their downstream signaling components. Here, we show that the Toll-Interleukin 1 receptor homology domain containing NLR (TNL) gene N (Necrosis), which confers resistance to Tobacco mosaic virus, is transcriptionally induced upon immune activation.

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Nicotiana tabacum and Nicotiana benthamiana are widely used models in plant biology research. However, genomic studies of these species have lagged. Here we report the chromosome-level reference genome assemblies for N.

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Gene editing using clustered, regularly interspaced short palindromic repeats (CRISPR) and CRISPR-associated (Cas) nuclease is an excellent tool for assessing gene function in plants. However, delivery of CRISPR/Cas-editing components into plant cells is still a major bottleneck and requires tissue culture-based approaches and regeneration of plants. To overcome this limitation, several plant viral vectors have recently been engineered to deliver single-guide RNA (sgRNA) targets into SpCas9-expressing plants.

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Proteins form complex networks through interaction to drive biological processes. Thus, dissecting protein-protein interactions (PPIs) is essential for interpreting cellular processes. To overcome the drawbacks of traditional approaches for analyzing PPIs, enzyme-catalyzed proximity labeling (PL) techniques based on peroxidases or biotin ligases have been developed and successfully utilized in mammalian systems.

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Chloroplast morphology changes during immunity, giving rise to tubule-like structures known as stromules. Stromules extend along microtubules and anchor to actin filaments along nuclei to promote perinuclear chloroplast clustering. This facilitates the transport of defense molecules/proteins from chloroplasts to the nucleus.

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The NLR (nucleotide-binding leucine-rich repeat) class immune receptor confers resistance to (TSWV). Although is known to activate immunity upon recognition of the TSWV movement protein NSm, we know very little about the downstream events that lead to resistance. Here, we investigated the -mediated early transcriptomic changes that occur in response to mechanical and thrips-mediated inoculation of TSWV, using near-isogenic tomato lines CNPH-LAM 147 () and Santa Clara ().

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Plant intracellular nucleotide-binding domain, leucine-rich repeat-containing receptors (NLRs) activate a robust immune response upon detection of pathogen effectors. How NLRs induce downstream immune defense genes remains poorly understood. The Mediator complex plays a central role in transducing signals from gene-specific transcription factors to the transcription machinery for gene transcription/activation.

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Plant viruses of the genus cause significant economic losses in various crops. The emergence of new tobamoviruses such as the tomato brown rugose fruit virus (ToBRFV) poses a major threat to global agriculture. Upon infection, plants mount a complex immune response to restrict virus replication and spread, involving a multilayered defense system that includes defense hormones, RNA silencing, and immune receptors.

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The tomato Tm-2 gene was considered to be one of the most durable resistance genes in agriculture, protecting against viruses of the Tobamovirus genus, such as tomato mosaic virus (ToMV) and tobacco mosaic virus (TMV). However, an emerging tobamovirus, tomato brown rugose fruit virus (ToBRFV), has overcome Tm-2 , damaging tomato production worldwide. Tm-2 encodes a nucleotide-binding leucine-rich repeat (NLR) class immune receptor that recognizes its effector, the tobamovirus movement protein (MP).

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Article Synopsis
  • NLR receptors help plants fight off diseases by quickly producing substances called reactive oxygen species (ROS) and changing how genes work.
  • The protein AL7 interacts with NLR receptors and acts as a repressor, meaning it can slow down some gene activity to help the plant defend itself.
  • By working with other proteins, AL7 helps regulate these defenses and controls the amount of ROS, which is important for the plant's immune response.
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Article Synopsis
  • Phytohormone signalling pathways play a crucial role in plant defence against pathogens through receptors that recognize specific patterns and intracellular immune receptors like NLR.
  • Pathogens, like the tomato spotted wilt virus (TSWV), have developed strategies to manipulate these signalling pathways, undermining the plant's immune response.
  • The study reveals that a pepper NLR protein, Tsw, evolves to counteract this manipulation by targeting a repressor (TCP21) that interacts with phytohormone receptors, thereby activating the plant's immune response against the pathogen.
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Article Synopsis
  • Intracellular movement is essential for the spread of viruses in plants, specifically involving movement proteins (MPs) like the TGBp3 of potexviruses, which interact with host proteins.
  • Using TurboID-based proximity labeling, researchers identified key host proteins, NbBiP4 and NbCRT3, that interact with TGBp3, linking them to the virus's movement complexes.
  • Experiments showed that these proteins are crucial for the efficient spread of the virus Bamboo mosaic virus (BaMV) in infected plants, indicating their role in transporting viral cargo to cell-to-cell connections for enhanced viral movement.
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Article Synopsis
  • Existing callose quantification methods, such as epifluorescence microscopy and immuno-fluorescence, can often be complex, time-consuming, and lacking specificity.
  • The study introduces a new method called Sandwich Enzyme-Linked Immunosorbent Assay (S-ELISA) for quantifying callose levels in banana plant tissues after bacterial inoculation.
  • This S-ELISA method is efficient, specific to callose, reproducible, and suitable for high-throughput studies, making it a promising alternative to traditional methods.
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Heritable base-editing using a viral delivery system enables high-throughput functional analysis of genes in .

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Plant immunity is the result of multiple distinct cellular processes cooperating with each other to generate immune responses. Autophagy is a conserved cellular recycling process and has well-established roles in nutrient starvation responses and cellular homeostasis. Recently, the role of autophagy in immunity has become increasingly evident.

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Mitogen-activated protein kinase (MAPK) cascades play an important role in innate immunity against various pathogens in plants and animals. However, we know very little about the importance of MAPK cascades in plant defense against viral pathogens. Here, we used a positive-strand RNA necrovirus, beet black scorch virus (BBSV), as a model to investigate the relationship between MAPK signaling and virus infection.

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