Publications by authors named "Dilyara Khusnutdinova"

While the gut microbiome has been intensively investigated for more than twenty years already, its role in various disorders remains to be unraveled. At the same time, questions about what changes in the gut microbiota can be considered as normal or pathological and whether communities are able to recover after exposure to negative factors (diseases, medications, environmental factors) are still unclear. Here, we describe changes in the gut microbiota composition and the content of short-chain fatty acids in adult healthy volunteers ( = 15) over a 24 month-period.

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Unlabelled: eradication therapy leads to significant changes in the gut microbiome, including influence on the gut microbiome's functional potential. Probiotics are one of the most studied potential methods for reducing the microbiota-related consequences of antibiotics. However, the beneficial effects of probiotics are still under discussion.

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Probiotic bacteria exhibiting antagonistic activities against pathogenic bacteria are widely considered as potential options for the prevention and treatment of various infectious diseases and represent potential substitutes of antibiotics. Here we show that the AG10 strain represses the growth of and in vitro and diminishes their negative effects in vivo in a model of survival on embryonic (larvae) and pupa stages. In an agar drop diffusion test, AG10 exhibited antagonistic properties against , , and , and repressed the growth of and during milk fermentation.

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is best known for its significant adaptive potential and ability to colonize different ecological niches. Different strains of are widely used as probiotics. To characterize the probiotic potential of the novel FCa3L strain isolated from fermented cabbage, we sequenced its whole genome using the Illumina MiSeq platform.

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Crohn's disease (CD) is a chronic relapsing inflammatory bowel disease of unknown etiology. Genetic predisposition and dysbiotic gut microbiota are important factors in the pathogenesis of CD. In this study, we analyzed the taxonomic composition of the gut microbiota and genotypes of 24 single nucleotide polymorphisms (SNP) associated with the risk of CD.

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Accumulating clinical and preclinical data indicate a prominent role of gut microbiota in regulation of physiological functions. The gut-brain axis imbalance due to gut dysbiosis is associated with a range of neurodegenerative diseases. Probiotics were suggested not only to restore intestinal dysbiosis but also modulate stress response and improve mood and anxiety symptoms.

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Article Synopsis
  • * Researchers sequenced genomes from 63 gut strains of CD patients and healthy individuals, revealing similar genetic traits related to virulence and antibiotic resistance.
  • * Findings indicate competitive bacteria interactions in the gut that could potentially harm the host, highlighting the complex dynamics of gut microbiota in CD.
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Lactic acid bacteria are widespread in various ecological niches with the excess of nutrients and have reduced capabilities to adapt to starvation. Among more than 280 Lactobacillus species known to the date, only five, including Lactobacillus hilgardii, carry in their genome the gene encoding for PII-like protein, one of the central regulators of cellular metabolism generally responding to energy- and carbon-nitrogen status in many free-living Bacteria, Archaea and in plant chloroplasts. In contrast to the classical PII encoding genes, in L.

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Article Synopsis
  • This study explores the gut microbiota and IBD biomarkers in patients from Kazan, Russia, addressing the growing interest in IBD in newly industrialized countries.* -
  • Researchers found significant changes in the gut microbiota of IBD patients, including increased levels of certain bacteria and decreased levels of beneficial species, indicating a dysbiotic state.* -
  • The findings suggest that these changes, particularly the imbalance of short-chain fatty acids (SCFAs), may impact important metabolic processes like hydrogen metabolism, which is crucial for understanding the disease.*
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Dysbiosis of the gut microbiota in inflammatory bowel disease (IBD) patients is of great interest. It has been reported that Crohn's disease (CD) is associated with a general decrease in microbial diversity [1]. Altered microbial composition and function in CD results in imbalance in host-bacteria interaction and increased immune stimulation [2].

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Article Synopsis
  • * A study showed that HP eradication therapy significantly reduced gut microbiota diversity and altered the abundance of various microbial species.
  • * Changes in antibiotic resistance genes (ARGs) were observed post-therapy, with some strains exhibiting higher resistance to specific antibiotics like macrolides and tetracyclines compared to others.
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  • The report presents shotgun sequencing data related to a study on gut microbiome changes during and after antibiotic eradication therapy for infections.
  • It includes whole-genome sequencing of DNA from stool samples taken before, during, and after treatment to analyze the gut microbiota's taxonomic and functional profiles.
  • The data highlights significant alterations in intestinal microbiota composition due to antibiotic use and is part of a larger metagenomic analysis, with associated sequencing available under project ID PRJEB21338 in the ENA database.
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