Bio-analog dissipative structures and principles of biological behavior.

The place of living organisms in the natural world is a nearly perennial question in philosophy and the sciences; how can inanimate matter yield animate beings? A dominant answer for several centuries has been to treat organisms as sophisticated machines, studying them with the mechanistic physics and chemistry that have given rise to technology and complex machines. Since the early 20th century, many scholars have sought instead to naturalize biology through thermodynamics, recognizing the precarious far-from-equilibrium state of organisms. Erwin Bauer was an early progenitor of this perspective with ambitions of "general laws for the movement of living matter".

Thermodynamics, organisms and behaviour.

The physical origin of behaviour in biological organisms is distinct from those of non-living systems in one significant way: organisms exhibit intentionality or goal-directed behaviour. How may we understand and explain this important aspect in physical terms, grounded in laws of physics and chemistry? In this article, we discuss recent experimental and theoretical progress in this area and future prospects of this line of thought. The physical basis for our investigation is thermodynamics, though other branches of physics and chemistry have an important role.

Foraging Dynamics and Entropy Production in a Simulated Proto-Cell.

All organisms depend on a supply of energetic resources to power behavior and the irreversible entropy-producing processes that sustain them. Dissipative structure theory has often been a source of inspiration for better understanding the thermodynamics of biology, yet real organisms are inordinately more complex than most laboratory systems. Here we report on a simulated chemical dissipative structure that operates as a proto cell.

Functional Interdependence in Coupled Dissipative Structures: Physical Foundations of Biological Coordination.

Coordination within and between organisms is one of the most complex abilities of living systems, requiring the concerted regulation of many physiological constituents, and this complexity can be particularly difficult to explain by appealing to physics. A valuable framework for understanding biological coordination is the , a self-organized assembly of physiological elements that collectively performs a specific function. Coordinative structures are characterized by three properties: (1) multiple coupled components, (2) soft-assembly, and (3) functional organization.

Dissipative Structures, Organisms and Evolution.

Self-organization in nonequilibrium systems has been known for over 50 years. Under nonequilibrium conditions, the state of a system can become unstable and a transition to an organized structure can occur. Such structures include oscillating chemical reactions and spatiotemporal patterns in chemical and other systems.

Particle Flock Motion at Air-Water Interface Driven by Interfacial Free Energy Foraging.

From flocks of birds and sheep to colonies of bacteria, complex patterns and self-motion are found in all hierarchies of nature. Artificial nonliving systems provide useful insight, since living systems are complicated and may involve cognitive issues not found in nonliving matter. Herein, we report naturally flocking irregularly shaped benzoquinone (BQ) particles on the air-water interface that cross a gate.

Oscillatory dynamics of an electrically driven dissipative structure.

Physical systems open to a flow of energy can exhibit spontaneous symmetry breaking and self-organization. These nonequilibrium self-organized systems are known as dissipative structures. We study the oscillatory mode of an electrically driven dissipative structure.

Thermal- and Magnetic-Sensitive Particle Flocking Motion at the Air-Water Interface.

Collective self-motion of particulate systems provides novel opportunities for developing flocking and sensing functions from seemingly inanimate objects. In this paper, we report videos documenting spontaneous collective flocking of multiple irregularly shaped macroscopic benzoquinone (BQ) particles at the air-water interface. Self-propulsion occurs due to the Gibbs-Marangoni effect surface tension gradients generated by the BQ particles.

Dissipative structures, machines, and organisms: A perspective.

Self-organization in nonequilibrium systems resulting in the formation of dissipative structures has been studied in a variety of systems, most prominently in chemical systems. We present a study of a voltage-driven dissipative structure consisting of conducting beads immersed in a viscous medium of oil. In this simple system, we observed remarkably complex organism-like behavior.

Co-operative motion of multiple benzoquinone disks at the air-water interface.

Self-motion of physical-chemical systems is a promising avenue for studying and developing mechanical functions with inanimate systems. In this paper, we investigate spontaneous motion of collections of solid macroscopic benzoquinone (BQ) disks at the air-water interface without intervention of chemical reactions. The BQ particles slowly dissolve and create heterogeneous interfacial tension fields on the water surface that drive the motion.

End-directed evolution and the emergence of energy-seeking behavior in a complex system.

Self-organization in a voltage-driven nonequilibrium system, consisting of conducting beads immersed in a viscous medium, gives rise to a dynamic tree structure that exhibits wormlike motion. The complex motion of the beads driven by the applied field, the dipole-dipole interaction between the beads and the hydrodynamic flow of the viscous medium, results in a time evolution of the tree structure towards states of lower resistance or higher dissipation and thus higher rates of entropy production. Thus emerges a remarkably organismlike energy-seeking behavior.

Analysis of the mechanism of asymmetric amplification by chiral auxiliary trans-1,2-diaminocyclohexane bistriflamide.

Asymmetric amplification is a phenomenon in which the enantiomeric excess (ee) of a product is higher than that of a chiral auxiliary for a catalyst. We analyzed the mechanism of asymmetric amplification observed in the addition of diethylzinc (Et(2)Zn) to benzaldehyde (PhCHO) to synthesize 1-phenyl-1-propanol in the presence of trans-1,2-diaminocyclohexane bistriflamide (DCBF) and titanium tetraisopropoxide (TIOP). In a manner similar to the reaction in which 1-piperidino-3,3-dimethyl-2-butanol is a chiral auxiliary for the catalyst, when asymmetric amplification was observed, the ee of the product varied as the reaction progressed.

Entropy production in chiral symmetry breaking transitions.

It is now well known that nonequilibrium chemical systems may reach conditions that spontaneously generate chiral asymmetry. One can find a host of model reactions that exhibit such behavior in the literature. Among these, models based on one originally devised by Frank have been studied extensively.

Emergence of homochirality in far-from-equilibrium systems: mechanisms and role in prebiotic chemistry.

Since the model proposed by Frank (Frank FC, Biochem Biophys Acta 1953;11:459-463), several alternative models have been developed to explain how an asymmetric non-racemic steady state can be reached by a chirally symmetric chemical reactive system. This paper explains how a stable non-racemic regime can be obtained as a symmetry breaking occurring in a far-from-equilibrium reactive system initiated with an initial imbalance. Departing from the variations around the original Frank's model that are commonly described in the literature, i.

A multilayer model for self-propagating high-temperature synthesis of intermetallic compounds.

Self-propagating high-temperature synthesis of intermetallic compounds is of wide interest. We consider reactions in a binary system in which the rise and fall of the temperature during the reaction is such that one of the reacting metals melts but not the other. For such a system, using the phase diagram of the binary system, we present a general theory that describes the reaction taking place in a single solid particle of one component surrounded by the melt of the second component.

Experimental evidence and theoretical analysis for the chiral symmetry breaking in the growth front of conglomerate crystal phase of 1,1'-binaphthyl.

Chirally asymmetric states, chemical oscillations, propagating chemical waves, and spatial patterns, are examples of far-from-equilibrium self-organization. We have found that the crystal growth front of 1,1(')-binaphthyl shows many of the characteristics of an open system in which chiral symmetry breaking has occurred. From its supercooled molten phase, 1,1(')-binaphthyl crystallizes as a conglomerate of R and S crystals when the temperature is above 145 degrees C.

Kinetic model for the chiral symmetry breaking transition in the growth front of a conglomerate crystal phase.

In its molten phase, 1,1'-binaphthyl is racemic due to its high racemization rate, but it can crystallize as a conglomerate of R and S crystals. Our experiments have indicated that, under some conditions, the crystal growth front of 1,1'-binaphthyl shows many of the characteristics of an open system in which chiral symmetry is broken; i.e.

Three-dimensional description of the spontaneous onset of homochirality on the surface of a conglomerate crystal phase.

The spontaneous emergence of homochirality in an initially racemic system can be obtained in far-from-equilibrium states. Traditional models do not take into account the influence of inhomogeneities, while they may be of great importance. What would happen when one configuration emerges at one position, and the opposite one at another position? We present a discrete three-dimensional model of conglomerate crystallization, based on 1,1'-binaphthyl crystallization experiments, that takes into account the position and environment of every single elementary growth subunit.

Chiral symmetry-breaking transition in growth front of crystal phase of 1,1'-binaphthyl in its supercooled melt.

Although the theory of spontaneous chiral symmetry-breaking in open systems was proposed some time ago, experimental realization of this phenomenon has not been achieved. In this article, we note that the crystal growth front of 1,1'-binaphthyl shows many of the characteristics of an open system in which chiral symmetry-breaking has occurred. We studied the temperature profiles of the crystallizing surface and obtained X-ray diffraction data of the crystals grown from the melt under controlled conditions.

Generation of molecular chiral asymmetry through stirred crystallization.

In our earlier work we established that stirred crystallization of achiral compounds that crystallize in enantiomeric forms result in spontaneous chiral symmetry breaking. The asymmetry thus spontaneously generated is confined to the solid state. In this article, we present a case in which the crystal enantiomeric excess (CEE) can be converted to molecular enantiomeric excess (EE) through a solid state reaction which relates the enantiomeric form of the crystal to the enantiomeric form of the product.

Probability distributions of enantiomeric excess in unstirred and stirred crystallization of 1,1'-binaphthyl melt.

Crystallization of 1, l'-binaphthyl from its melt can generate optical activity spontaneously. Since crystallization is a stochastic process, the enantiomeric excess (ee) generated in each crystallization varies randomly. We investigated the qualitative features of probability distribution of the ee for crystallization at two temperatures, 150 degrees C and 152 degrees C, at which conglomerate crystallization occurs.