Publications by authors named "Deog-Yong Lee"

Rotavirus is the most common pathogen causing pediatric diarrhea and an important cause of morbidity and mortality in low- and middle-income countries. Previous evidence suggests that the introduction of rotavirus vaccines in national immunization schedules resulted in dramatic declines in disease burden but may also be changing the rotavirus genetic landscape and driving the emergence of new genotypes. We report genotype data of more than 16,000 rotavirus isolates from 40 countries participating in the Global Rotavirus Surveillance Network.

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  • In February 2022, an outbreak of hepatitis E virus (HEV) occurred in a food manufacturing factory in Korea, with 12 cases identified among production workers.
  • The study involved investigating the demographic and clinical characteristics of these cases, as well as collecting specimens from the environment and humans for further analysis.
  • Although 15% of workers tested positive for acute HEV infection, all were asymptomatic, and the source of the HEV remained unclear since no viruses were found in food or environmental samples.
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The rotavirus vaccine is a live vaccine, and there is a possibility of infection by the virus strain used in the vaccine. We investigated the process of determining whether an infection was caused by the vaccine strain in a severe complex immunodeficiency (SCID) patient with rotavirus infection. The patient was vaccinated with RotaTeq prior to being diagnosed with SCID.

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  • The study investigates the ongoing risk of polio re-emergence, particularly in regions previously declared polio-free, by examining acute flaccid paralysis (AFP) cases in Korea from 2012 to 2019.
  • A total of 637 AFP patients under 15 were analyzed, with non-polio enterovirus (NPEV) detected in 33.4% of cases, predominantly the EV-A71 strain.
  • The findings underscore the importance of effective AFP surveillance in understanding non-polio enterovirus-related neurological diseases and monitoring for potential polio outbreaks.
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Hepatitis A, an acute type of hepatitis caused by the hepatitis A virus, occurs worldwide. Following the 2009 hepatitis A epidemic in South Korea, patient outbreak reports were collectively converted to an "all-patient report" in 2011, and national immunization programs were introduced for children in 2015. In this study, we aimed to analyze the changes and characteristics of hepatitis A antibody titers in South Korea following the epidemic.

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We here report the first outbreak caused by rotavirus G11,P[25] in Korea in 2018, representing a case of re-assortment with pig-derived rotavirus. The genotype constellation was identical to the virus identified in Korea in 2012 as G11-P[25]-I12-R1-C1-M1-A1-N1-T1-E1-H1. The infection source was not known exactly but it must be considered infection from swine.

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  • Acute gastroenteritis is a significant global health issue, and this study analyzed its trends and characteristics using data from a national surveillance network between 2013 and 2019.
  • Out of 31,750 cases assessed, 30.1% were linked to enteric viruses, with norovirus (15.2%) and group A rotavirus (9.7%) being the most common pathogens, particularly affecting children under 5 years during specific seasons.
  • The study also noted notable changes in virus trends, such as the extension of norovirus prevalence into spring and the emergence of new viral genotypes.
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Background: Enteroviruses (EVs) occur frequently worldwide and are known to be associated with a broad spectrum of clinical manifestations from mild syndromes to neurological disease. To understand the epidemiology of EV in Korea, we characterized EV-infected cases during 2012-2019 based on national surveillance.

Methods: We collected specimens from patients with suspected EV infections and analyzed the data using real-time reverse-transcription polymerase chain reaction and VP1 gene sequencing.

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On October 4, 2018, an outbreak of gastroenteritis associated with sapovirus occurred among elementary school students in Gyeonggi-do, Korea. Epidemiologic studies were conducted in a retrospective cohort approach. Using self-administered questionnaires, we collected information on symptoms and food items consumed.

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This study aimed to determine the presence of SARS-CoV-2 on surfaces frequently touched by COVID-19 patients, and assess the scope of contamination and transmissibility in facilities where the outbreaks occurred. In the course of this epidemiological investigation, a total of 80 environmental specimens were collected from 6 hospitals (68 specimens) and 2 "mass facilities" (6 specimens from a rehabilitation center and 6 specimens from an apartment building complex). Specific reverse transcriptase-polymerase chain reaction targeting of RNA-dependent RNA polymerase, and envelope genes, were used to identify the presence of this novel coronavirus.

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We screened 10 CTX-M-55-producing Shigella and Salmonella isolates from a national surveillance in Korea. The bla was located on the IncI1 (n=5), IncA/C (n=4) and IncZ (n=1) plasmids, downstream of ISEcp1, IS26-ISEcp1 and ISEcp1-IS5 sequences, respectively. These results indicate that CTX-M-55 has disseminated to other bacteria by lateral plasmid transfer.

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Human norovirus are major causative agent of nonbacterial acute gastroenteritis. In general, genogroup (G) II.4 is the most prominent major genotype that circulate in human population and the environment.

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Salmonella enterica serovar Enteritidis is one of the most common serotypes implicated in Salmonella infections in both humans and poultry worldwide. It has been reported that human salmonellosis is mainly associated with the consumption of poultry products contaminated with serovar Enteritidis. The present study was to extensively analyze the public health risk of serovar Enteritidis isolates from chickens in Korea.

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Here, we announce the complete genome sequence of Salmonella enterica serovar Enteritidis (S Enteritidis) bacteriophage MA12, a 41-Kb chromosome. The strain can infect both Campylobacter jejuni (C. jejuni) and S Enteritidis and can be used in phage therapy experiments with poultry and poultry meat.

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  • A new bacteriophage, called GG32, was isolated from the Guem River in Korea.
  • This bacteriophage can infect Salmonella enterica serovar Typhimurium and E. coli O157:H7.
  • GG32 shows potential as a bio-control agent for managing these bacterial infections.
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Background: Benign convulsions with gastroenteritis (CwG) are defined as afebrile convulsions accompanying symptoms of gastroenteritis without evidence of laboratory derangement. Although the main pathogen has been known as rotavirus, since the introduction of rotavirus vaccine, associated viruses with CwG may have changed. Thus, we evaluated the viral association of CwG for patients admitting for recent 2.

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Human noroviruses are major causative agents of food and waterborne outbreaks of nonbacterial acute gastroenteritis. In this study, we report the epidemiological features of three outbreak cases of norovirus in Korea, and we describe the clinical symptoms and distribution of the causative genotypes. The incidence rates of the three outbreaks were 16.

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Norovirus GII.4 is recognized as a worldwide cause of nonbacterial outbreaks. In particular, the GII.

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The prevalence of cefotaxime-resistant Salmonella enterica serotype Virchow has dramatically increased in South Korea since the first isolation in 2011. Of 68 isolates collected over 10 years, 28 cefotaxime-resistant isolates harbored the bla(CTX-M-15) extended-spectrum β-lactamase gene and were closely related genetically, demonstrating the clonal dissemination of CTX-M-15-producing Salmonella Virchow in South Korea.

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Background: New emerging strains of noroviruses (NoVs) often increase acute gastroenteritis (AGE) outbreaks worldwide.

Objective: We analyzed the epidemiological features and genotypic patterns of NoVs in AGE outbreaks.

Study Design: To elucidate the public health impact of NoVs during AGE outbreaks in South Korea, a molecular and epidemiological investigation was performed with 318 AGE outbreaks reported from the Gyeonggi province of South Korea during the period from 2006 to 2013.

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Between 2011 and 2012, a total of 896 pig fecal samples were collected from nine provinces in Korea, and 50 salmonella enterica susp. enterica serovar Typhimurium (S. Typhimurium) was isolated.

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Background: In April 2013, outbreaks of acute gastroenteritis were reported at three schools in Jeonju, South Korea. Epidemiological investigations were performed to characterize the outbreaks and implement appropriate control measures.

Materials And Methods: Retrospective cohort studies were performed at these schools.

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Background: The global emergence of norovirus (NoV) GII.4 variants has raised public concerns in the world including South Korea since 1996.

Objective: We analyzed seasonality and genotypic pattern for sporadic cases by norovirus GII-4 variants.

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Objective: In this study, the factors that induced a decrease in the incidence of typhoid fever were analyzed. Based on the study results, we propose a quantitative and concrete solution to reduce the incidence of typhoid fever.

Methods: We analyzed the incidence and fatality rate of typhoid fever in Korea.

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