Publications by authors named "Deng Yiqin"

Article Synopsis
  • Scylla paramamosain, an important crab species in aquaculture, is increasingly threatened by the highly pathogenic mud crab dicistrovirus-1 (MCDV-1), which disrupts its cultivation due to viral diseases.
  • A study analyzed the immune response of infected mud crabs, revealing 5,139 differentially expressed genes and highlighting pathways related to humoral immunity that the crabs activate to combat MCDV-1, while also showing disruptions in metabolic processes.
  • The research identified 9 key hub genes linked to viral endocytosis, indicating that MCDV-1 may utilize this process to enter crab cells and replicate, marking a significant step in understanding the viral
View Article and Find Full Text PDF
Article Synopsis
  • Vibrio parahaemolyticus is a harmful bacteria that affects mud crabs, causing significant health and economic issues in the industry, particularly in South China.
  • This research used genome sequencing and various experiments to uncover how this bacteria infects mud crabs, identifying over 400 genes related to its virulence and adherence.
  • The findings highlight key genes involved in the infection process, which can help in developing strategies for preventing and controlling outbreaks of this pathogen.
View Article and Find Full Text PDF

This study marks the first occasion that has been isolated, identified, and characterized as the causative pathogen in spotted sea bass (). Infected fish exhibited a range of external symptoms, including scale loss, bleeding from the jaw, anus, and tail, among other signs, as well as internal manifestations such as congested liver, splenomegaly, branchial anemia, yellow fat syndrome, and intestinal edema. Notably, exophthalmia and meningoencephalitis-typical symptoms associated with previous infections-were not observed.

View Article and Find Full Text PDF

Laminin receptor (LR), which mediating cell adhesion to the extracellular matrix, plays a crucial role in cell signaling and regulatory functions. In the present study, a laminin receptor gene (SpLR) was cloned and characterized from the mud crab (Scylla paramamosain). The full length of SpLR contained an open reading frame (ORF) of 960 bp encoding 319 amino acids, a 5' untranslated region (UTR) of 66 bp and a 3' UTR of 49 bp.

View Article and Find Full Text PDF

Hypoxia-inducible factors -1 (HIF-1) is a crucial transcription factor that regulates the expression of glycolytic genes. Our previous study proved that the Mud crab dicistrovirus-1 (MCDV-1) can induce aerobic glycolysis that favors viral replication in mud crab Scylla paramamosain. However, the role of HIF-1 on key glycolytic genes during the MCDV-1 infection has not been examined.

View Article and Find Full Text PDF

Hfq is a global regulator and can be involved in multiple cellular processes by assisting small regulatory RNAs (sRNAs) to target mRNAs. To gain insight into the virulence regulation of Hfq in , the null mutant, ∆, was constructed in strain 345. Compared with the wild-type strain, the mortality of pearl gentian sharply declined from 80% to 0% in ∆ when infected with a dose that was 7.

View Article and Find Full Text PDF

Activating transcription factor 6 (ATF6) is critical for regulation of unfolded protein response (UPR), which is involved in the endoplasmic reticulum (ER) proteostasis maintenance and cellular redox regulation. In the present study, a ATF6 gene from the mud crab (designated as Sp-ATF6) has been cloned and identified. The open reading frame of Sp-ATF6 was 1917 bp, encoding a protein of 638 amino acids.

View Article and Find Full Text PDF

Heat shock proteins play an important role in host defense, and modulate immune responses against pathogen infection. In this study, a novel HSC70 from the mud crab (designated as SpHSC70) was cloned and characterized. The full length of SpHSC70 contained a 58 bp 5'untranslated region (UTR), an open reading frame (ORF) of 2,046 bp and a 3'UTR of 341 bp.

View Article and Find Full Text PDF

The transcription factor Nrf2 plays vital roles in detoxification and antioxidant enzymes against oxidative stress. However, the function of Nrf2 in crustaceans is not well studied. In this study, a novel Nrf2 gene from the mud crab (Sp-Nrf2) was identified.

View Article and Find Full Text PDF

Cadmium is one of hazardous pollutants that has a great threat to aquatic organisms and ecosystems. The intestine plays important roles in barrier function and immunity to defend against environmental stress. However, whether cadmium exposure caused the intestine injury is not well studied.

View Article and Find Full Text PDF

Cytochrome P450 (CYPs) enzymes are one of the critical detoxification enzymes, playing a key role in antioxidant defense. However, the information of CYPs cDNA sequences and their functions are lacked in crustaceans. In this study, a novel full-length of CYP2 from the mud crab (designated as Sp-CYP2) was cloned and characterized.

View Article and Find Full Text PDF

Glutaredoxin (Grx) is a glutathione-dependent oxidoreductase that plays a key role in antioxidant defense. In this study, a novel Grx2 gene (SpGrx2) was identified from the mud crab Scylla paramamosain, which consists of a 196 bp 5' untranslated region, a 357 bp open reading frame, and a 964 bp 3' untranslated region. The putative SpGrx2 protein has a typical single Grx domain with the active center sequence C-P-Y-C.

View Article and Find Full Text PDF

The transmission of antibiotic resistance genes (ARGs) affects the safety of aquaculture animals. Dissolved oxygen (DO) can affect the transmission of ARGs, but its mechanism of action in this process is unclear. We conducted laboratory breeding experiment with low and control DO groups.

View Article and Find Full Text PDF
Article Synopsis
  • * The study successfully cloned and characterized a new variant of Grx (Sp-Grx 5) in mud crabs, revealing it to have a unique sequence and high expression levels in specific tissues like the hepatopancreas.
  • * Sp-Grx 5 expression increases significantly when crabs face stressors like infection or toxins, indicating its involvement in immune response and detoxification, while also enhancing cell survival under oxidative stress.
View Article and Find Full Text PDF
Article Synopsis
  • Phosphofructokinase (PFK) is a crucial enzyme in glycolysis, and researchers have cloned and studied a specific PFK gene (SpPFK) from the mud crab Scylla paramamosain.
  • The SpPFK gene consists of 249 bp of 5' UTR, a 2,859 bp open reading frame, and 1,248 bp of 3' UTR, with high expression levels in the gill, hemocytes, and muscle, especially after infection with mud crab dicistrovirus-1 (MCDV-1).
  • Knocking down SpPFK through RNA interference was shown to lower lactate dehydrogenase levels, enhance survival rates in
View Article and Find Full Text PDF

Antibiotic resistance genes (ARGs) have drawn increasing attention as novel environmental pollutants because of the threat they impose on human and animal health. The sea bass (Lateolabrax maculatus) is the third most cultured marine fish in China. Therefore, a study of ARG pollution in the sea bass culture environment is of great significance for the healthy and sustainable development of the sea bass industry.

View Article and Find Full Text PDF

can cause infections and diseases in a variety of marine vertebrates and invertebrates, which are harmful to the aquaculture industry. The LuxS quorum-sensing system regulates the expression of virulence factors in a wide variety of pathogenic bacteria. In this study, an in-frame deletion of the gene was constructed to reveal the role of LuxS in the physiology and virulence of .

View Article and Find Full Text PDF
Article Synopsis
  • Apoptosis is crucial for the immune defense against infections, and caspase 3, a family of proteins, plays a key role in this process.
  • The full-length caspase 3 from mud crab (Sp-caspase 3) was cloned, characterized, and found to be expressed widely, especially in hemocytes, with its activity located in both the cytoplasm and nucleus.
  • Over-expressing Sp-caspase 3 can induce cell death and its expression increases during infection with V. Parahaemolyticus, while knocking it down reduces apoptosis and increases crab mortality.
View Article and Find Full Text PDF

Vibrio harveyi is a Gram-negative bacterium that occurs widely in the ocean and a kind of pathogenic bacteria associated with vibriosis in grouper. We investigated whether the VscCD protein of the type Ⅲ secretion system (T3SS) was important for pathogenicity of V. harveyi.

View Article and Find Full Text PDF

Oxidative stress is considered as the toxicity mechanism of environmental stressors on aquatic organisms. This study aims to explore the effects of oxidative stress on physiological responses, DNA damage and transcriptional profiles of the mud crabs Scylla paramamosain. In the present study, mud crabs were injected with 0.

View Article and Find Full Text PDF

Mud crab (Scylla paramamosain) is an economically important cultured species in China. Hypoxia is a major environmental stressor during mud crab culture. In the present study, we investigated the oxidative stress and transcriptome changes in the gills of mud crab after intermediate hypoxia stress with dissolved oxygen (DO) 3.

View Article and Find Full Text PDF

To analyze the mechanism of bacterial pathogen removal in seagrass meadows, we compared bacterial pathogens abundance in trapped particles in different seagrass meadows under different intensities of human activities. We compared the particle deposition rates and abundances of bacterial pathogen in Thalassia hemprichii, Enhalus acoroides stands and adjacent unvegetated patches. The bacterial pathogens abundance was much higher in E.

View Article and Find Full Text PDF
Article Synopsis
  • The study identified and characterized the p53 gene (Sp-53) in the mud crab, showing it is vital for DNA repair, cell cycle regulation, and maintaining genetic stability.
  • Sp-53 is expressed in all tissues, especially in the hepatopancreas and hemocytes, and its expression increases significantly after infection with Vibrio parahaemolyticus, leading to oxidative stress and DNA damage.
  • Knocking down Sp-53 through RNA interference resulted in lower antioxidant and apoptosis-related gene expression, higher crab mortality, and increased DNA damage, indicating Sp-53's crucial role in managing infections and cellular damage.
View Article and Find Full Text PDF

causes vibriosis in nearly 70% of grouper ( sp.), seriously limiting grouper culture. As well as directly inhibiting pathogens, the gut microbiota plays critical roles in immune homeostasis and provides essential health benefits to its host.

View Article and Find Full Text PDF

Cadmium is one of the most common heavy metal pollutants in the aquatic environment. Mud crab (Scylla paramamosain) is considered a model organism to monitor the impact of heavy metals. However, knowledge about toxicological mechanism of cadmium in crustaceans still remains limited.

View Article and Find Full Text PDF