A Novel Spatio-temporal Hub Identification in Brain Networks by Learning Dynamic Graph Embedding on Grassmannian Manifolds.

Mounting evidence has revealed that functional brain networks are intrinsically dynamic, undergoing changes over time, even in the rest-state environment. Notably, recent studies have highlighted the existence of a small number of critical brain regions within each functional brain network that exhibit a flexible role in adapting the geometric pattern of brain connectivity over time, referred to as "temporal hub" regions. Therefore, the identification of these temporal hubs becomes pivotal for comprehending the mechanisms that underlie the dynamic evolution of brain connectivity.

Identifying multilayer network hub by graph representation learning.

The recent advances in neuroimaging technology allow us to understand how the human brain is wired in vivo and how functional activity is synchronized across multiple regions. Growing evidence shows that the complexity of the functional connectivity is far beyond the widely used mono-layer network. Indeed, the hierarchical processing information among distinct brain regions and across multiple channels requires using a more advanced multilayer model to understand the synchronization across the brain that underlies functional brain networks.

Model compression for real-time object detection using rigorous gradation pruning.

Achieving lightweight real-time object detection necessitates balancing model compression with detection accuracy, a difficulty exacerbated by low redundancy and uneven contributions from convolutional layers. As an alternative to traditional methods, we propose Rigorous Gradation Pruning (RGP), which uses a desensitized first-order Taylor approximation to assess filter importance, enabling precise pruning of redundant kernels. This approach includes the iterative reassessment of layer significance to protect essential layers, ensuring effective detection performance.

TMT-based proteomic analysis of radiation lung injury in rats.

Radiation-induced lung injury (RILI) is a common adverse effect of radiation therapy that negatively affects treatment progression and the quality of life of patients. Identifying biomarkers for RILI can provide reference for the prevention and treatment of RILI in clinical practice. In this study, to explore key proteins related to RILI, we constructed a rat model of RILI and analyzed RILI tissues and normal lung tissues using tandem mass spectrometry labeling and quantitative proteomics technology.

Radiotherapy Combined With Zoledronic Acid for Fibrous Dysplasia With a Central Giant Cell Granuloma: A Case Report.

Background: Giant cell reparative granulomas are nonneoplastic, benign lesions that can expand and dissolve bone. Fibrous dysplasia is a benign condition in which normal bone tissue is replaced by abnormally proliferating immature reticular bone and fibrous tissue. The combination of giant cell reparative granuloma and fibrous dysplasia is extremely rare and can pose diagnostic and therapeutic challenges because of the complexity of clinical presentation.

Prevalence and clinical characteristics of venous thromboembolism in patients with lung cancer: a systematic review and meta-analysis.

Background: The prevalence of venous thromboembolism (VTE) is high in patients with cancer and can often present as the first symptom of malignancy. Cancer-associated VTE is one of the most important risk factors contributing to cancer mortality, making its prevention and treatment critical for patients with lung cancer.

Methods: We systematically searched for observational studies that estimated the prevalence of VTE in patients with lung cancer.

Harmonic Wavelet Neural Network for Discovering Neuropathological Propagation Patterns in Alzheimer's Disease.

Emerging researchindicates that the degenerative biomarkers associated with Alzheimer's disease (AD) exhibit a non-random distribution within the cerebral cortex, instead following the structural brain network. The alterations in brain networks occur much earlier than the onset of clinical symptoms, thereby affecting the progression of brain disease. In this context, the utilization of computational methods to ascertain the propagation patterns of neuropathological events would contribute to the comprehension of the pathophysiological mechanism involved in the evolution of AD.

SCRN: Single-Cell Gene Regulatory Network Identification in Alzheimer's Disease.

Alzheimer's disease (AD) is the most common neurodegenerative disease, and it consumes considerable medical resources with increasing number of patients every year. Mounting evidence show that the regulatory disruptions altering the intrinsic activity of genes in brain cells contribute to AD pathogenesis. To gain insights into the underlying gene regulation in AD, we proposed a graph learning method, Single-Cell based Regulatory Network (SCRN), to identify the regulatory mechanisms based on single-cell data.

A streamlined approach for intelligent ship object detection using EL-YOLO algorithm.

Maritime objects frequently exhibit low-quality and insufficient feature information, particularly in complex maritime environments characterized by challenges such as small objects, waves, and reflections. This situation poses significant challenges to the development of reliable object detection including the strategies of loss function and the feature understanding capabilities in common YOLOv8 (You Only Look Once) detectors. Furthermore, the widespread adoption and unmanned operation of intelligent ships have generated increasing demands on the computational efficiency and cost of object detection hardware, necessitating the development of more lightweight network architectures.

Uncovering the System Vulnerability and Criticality of Human Brain Under Dynamical Neuropathological Events in Alzheimer's Disease.

Background: Despite the striking efforts in investigating neurobiological factors behind the acquisition of amyloid-β (A), protein tau (T), and neurodegeneration ([N]) biomarkers, the mechanistic pathways of how AT[N] biomarkers spreading throughout the brain remain elusive.

Objective: To disentangle the massive heterogeneities in Alzheimer's disease (AD) progressions and identify vulnerable/critical brain regions to AD pathology.

Methods: In this work, we characterized the interaction of AT[N] biomarkers and their propagation across brain networks using a novel bistable reaction-diffusion model, which allows us to establish a new systems biology underpinning of AD progression.

Pathology steered stratification network for subtype identification in Alzheimer's disease.

Background: Alzheimer's disease (AD) is a heterogeneous, multifactorial neurodegenerative disorder characterized by three neurobiological factors beta-amyloid, pathologic tau, and neurodegeneration. There are no effective treatments for AD at a late stage, urging for early detection and prevention. However, existing statistical inference approaches in neuroimaging studies of AD subtype identification do not take into account the pathological domain knowledge, which could lead to ill-posed results that are sometimes inconsistent with the essential neurological principles.

Learning pyramidal multi-scale harmonic wavelets for identifying the neuropathology propagation patterns of Alzheimer's disease.

Previous studies have established that neurodegenerative disease such as Alzheimer's disease (AD) is a disconnection syndrome, where the neuropathological burdens often propagate across the brain network to interfere with the structural and functional connections. In this context, identifying the propagation patterns of neuropathological burdens sheds new light on understanding the pathophysiological mechanism of AD progression. However, little attention has been paid to propagation pattern identification by fully considering the intrinsic properties of brain-network organization, which plays an important role in improving the interpretability of the identified propagation pathways.

Estimating Outlier-Immunized Common Harmonic Waves for Brain Network Analyses on the Stiefel Manifold.

Since brain network organization is essentially governed by the harmonic waves derived from the Eigen-system of the underlying Laplacian matrix, discovering the harmonic-based alterations provides a new window to understand the pathogenic mechanism of Alzheimer's disease (AD) in a unified reference space. However, current reference (common harmonic waves) estimation studies over the individual harmonic waves are often sensitive to outliers, which are obtained by averaging the heterogenous individual brain networks. To address this challenge, we propose a novel manifold learning approach to identify a set of outlier-immunized common harmonic waves.

scENT for Revealing Gene Clusters From Single-Cell RNA-Seq Data.

Recently, the fast development of single-cell RNA-seq (scRNA-seq) techniques has enabled high-resolution transcriptomic statistical analysis of individual cells in heterogeneous tissues, which can help researchers to explore the relationship between genes and human diseases. The emerging scRNA-seq data results in new analysis methods aiming to identify cell-level clustering and annotations. However, there are few methods developed to gain insights into the gene-level clusters with biological significance.

Dual-Stream Subspace Clustering Network for revealing gene targets in Alzheimer's disease.

The rapid development of scRNA-seq technology in recent years has enabled us to capture high-throughput gene expression profiles at single-cell resolution, reveal the heterogeneity of complex cell populations, and greatly advance our understanding of the underlying mechanisms in human diseases. Traditional methods for gene co-expression clustering are limited to discovering effective gene groups in scRNA-seq data. In this paper, we propose a novel gene clustering method based on convolutional neural networks called Dual-Stream Subspace Clustering Network (DS-SCNet).

Dynamic Cross-Task Representation Adaptation for Clinical Targets Co-Segmentation in CT Image-Guided Post-Prostatectomy Radiotherapy.

Adjuvant and salvage radiotherapy after radical prostatectomy requires precise delineations of prostate bed (PB), i.e., the clinical target volume, and surrounding organs at risk (OARs) to optimize radiotherapy planning.

A Graph Convolutional Multiple Instance Learning on a Hypersphere Manifold Approach for Diagnosing Chronic Obstructive Pulmonary Disease in CT Images.

Chronic obstructive pulmonary disease (COPD) is a prevalent chronic disease with high morbidity and mortality. The early diagnosis of COPD is vital for clinical treatment, which helps patients to have a better quality of life. Because COPD can be ascribed to chronic bronchitis and emphysema, lesions in a computed tomography (CT) image can present anywhere inside the lung with different types, shapes and sizes.

Characterizing the propagation pathway of neuropathological events of Alzheimer's disease using harmonic wavelet analysis.

Empirical imaging biomarkers such as the level of the regional pathological burden are widely used to measure the risk of developing neurodegenerative diseases such as Alzheimer's disease (AD). However, ample evidence shows that the brain network (wirings of white matter fibers) plays a vital role in the progression of AD, where neuropathological burdens often propagate across the brain network in a prion-like manner. In this context, characterizing the spreading pathway of AD-related neuropathological events sheds new light on understanding the heterogeneity of pathophysiological mechanisms in AD.

Two-stage deep learning network-based few-view image reconstruction for parallel-beam projection tomography.

Background: Projection tomography (PT) is a very important and valuable method for fast volumetric imaging with isotropic spatial resolution. Sparse-view or limited-angle reconstruction-based PT can greatly reduce data acquisition time, lower radiation doses, and simplify sample fixation modes. However, few techniques can currently achieve image reconstruction based on few-view projection data, which is especially important for PT in living organisms.

Characterizing Network Selectiveness to the Dynamic Spreading of Neuropathological Events in Alzheimer's Disease.

Background: Mounting evidence shows that the neuropathological burdens manifest preference in affecting brain regions during the dynamic progression of Alzheimer's disease (AD). Since the distinct brain regions are physically wired by white matter fibers, it is reasonable to hypothesize the differential spreading pattern of neuropathological burdens may underlie the wiring topology, which can be characterized using neuroimaging and network science technologies.

Objective: To study the dynamic spreading patterns of neuropathological events in AD.

Harnessing the Power of Hybrid Light Propagation Model for Three-Dimensional Optical Imaging in Cancer Detection.

Optical imaging is an emerging technology capable of qualitatively and quantitatively observing life processes at the cellular or molecular level and plays a significant role in cancer detection. In particular, to overcome the disadvantages of traditional optical imaging that only two-dimensionally and qualitatively detect biomedical information, the corresponding three-dimensional (3D) imaging technology is intensively explored to provide 3D quantitative information, such as localization and distribution and tumor cell volume. To retrieve these information, light propagation models that reflect the interaction between light and biological tissues are an important prerequisite and basis for 3D optical imaging.

Joint hub identification for brain networks by multivariate graph inference.

Recent developments in neuroimaging allow us to investigate the structural and functional connectivity between brain regions in vivo. Mounting evidence suggests that hub nodes play a central role in brain communication and neural integration. Such high centrality, however, makes hub nodes particularly susceptible to pathological network alterations and the identification of hub nodes from brain networks has attracted much attention in neuroimaging.

Group-Wise Hub Identification by Learning Common Graph Embeddings on Grassmannian Manifold.

Human brain is a complex yet economically organized system, where a small portion of critical hub regions support the majority of brain functions. The identification of common hub nodes in a population of networks is often simplified as a voting procedure on the set of identified hub nodes across individual brain networks, which ignores the intrinsic data geometry and partially lacks the reproducible findings in neuroscience. Hence, we propose a first-ever group-wise hub identification method to identify hub nodes that are common across a population of individual brain networks.

Learning dynamic graph embeddings for accurate detection of cognitive state changes in functional brain networks.

Mounting evidence shows that brain functions and cognitive states are dynamically changing even in the resting state rather than remaining at a single constant state. Due to the relatively small changes in BOLD (blood-oxygen-level-dependent) signals across tasks, it is difficult to detect the change of cognitive status without requiring prior knowledge of the experimental design. To address this challenge, we present a dynamic graph learning approach to generate an ensemble of subject-specific dynamic graph embeddings, which allows us to use brain networks to disentangle cognitive events more accurately than using raw BOLD signals.