Publications by authors named "Deepti Gupta"

 Diwali is a festival that is passionately celebrated by Indians all across the globe. Fire hazards associated with this festival are well known. Our hospital is a tertiary care burn center and caters to a patient population from all over North India.

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  • The disorder discussed leads to autosomal recessive microcephaly and chorioretinopathy, recently identified as a syndrome due to distinct eye-related symptoms and overlapping features like short stature and microcephaly.
  • A case study details the first Indian family displaying this disorder, where an affected child and fetal sibling shown to have microcephaly and brain abnormalities underwent extensive genomic testing confirming their condition.
  • The findings reveal novel genetic variants and underscore the complexity of diagnosis, emphasizing the importance of whole genome sequencing in rare conditions.
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We present a novel system that leverages curators in the loop to develop a dataset and model for detecting structure features and functional annotations at residue-level from standard publication text. Our approach involves the integration of data from multiple resources, including PDBe, EuropePMC, PubMedCentral, and PubMed, combined with annotation guidelines from UniProt, and LitSuggest and HuggingFace models as tools in the annotation process. A team of seven annotators manually curated ten articles for named entities, which we utilized to train a starting PubmedBert model from HuggingFace.

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Importance: Chronic skin disorders in children frequently are visible and can cause stigmatization. However, the extent of stigmatization from chronic skin disease and association with mental health needs further study.

Objective: To examine the extent of stigma, dependence on disease visibility and severity, and association with mental health and quality of life (QOL) in chronic pediatric skin disease.

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 Skin grafting plays a vital role in post-burn and post-traumatic wound management. Split-thickness skin grafts (STSG) are traditionally fixed using staples or sutures, which have tedious application and their removal necessitates painkillers, medical equipment, and human intervention. As an alternative, fibrin sealant is a biological tissue adhesive, composed of thrombin, calcium, and fibrinogen.

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Fabrics act as fomites for microorganisms, thereby playing a significant role in infection transmission, especially in the healthcare and hospitality sectors. This study aimed to examine the biofilm formation ability of four nosocomial infection-causing bacteria (Acinetobacter calcoaceticus, Escherichia coli, Pseudomonas aeruginosa, and Staphylococcus aureus) on cotton, polyester, polyester-cotton blend, silk, wool, viscose, and nylon, used frequently in the healthcare sector, by qualitative and quantitative methods. The impact of temperature, pH, and relative humidity (RH) on biofilm formation was also assessed.

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  • Macromolecular complexes are crucial for cellular functions, and understanding their structure at the atomic level is vital for studying molecular mechanisms.
  • The Protein Data Bank (PDB) collects structural data of these complexes, but inconsistent naming practices make it hard to identify similar assemblies.
  • This study developed a method using external resources to standardize naming for over 90% of PDB assemblies, improving data organization and supporting better research and education efforts.
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  • Ulceration is a problem that can happen with a type of growth called infantile hemangioma (IH), and this study looks at severe cases of it.
  • The researchers studied 35 patients and found that large hemangiomas with thin tops were most often linked to aggressive ulceration, especially in certain body areas.
  • Understanding these different types of IH and their ulceration patterns can help doctors treat kids better by spotting which ones might have more serious problems.
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Firecrackers are a common cause of burns in India; large-scale use of firecrackers is seen during the festival of Diwali, and patients of all age groups present with varying patterns of firecracker burns. With the recent ban of firecrackers in some parts of the country, we have noticed a new emerging cause of burns during Diwali where patients were attempting to prepare firecrackers at home using (sulfur) and potash by mixing the materials in a pipe gun. Explosion of this powder leads to varying degree of burns, and this series reports 12 such cases who presented to a tertiary care burn unit in North India during the 2022 festival of Diwali.

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  • Chronic Recurrent Multifocal Osteomyelitis (CRMO) is an uncommon inflammatory bone condition often requiring immunosuppressive treatment, with tumor necrosis factor inhibitors (TNFi) serving as a second-line therapy, potentially causing paradoxical psoriasis in some patients.
  • The study aimed to evaluate the effectiveness and safety of golimumab, a humanized TNFi, in children with CRMO, especially those who developed psoriasis after previous TNFi therapies.
  • Analysis was conducted on 18 CRMO patients treated with golimumab, revealing a median treatment observation period of nearly 10 months and documenting various therapeutic responses and patient outcomes.
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  • The study aimed to create phonemically balanced passages in Punjabi, designed to reflect the sound distribution in the spoken language using familiar words.
  • Five speech-language pathologists validated the passages, after which 100 participants with normal hearing were tested for nasalence while reading them.
  • The results showed varying nasalence scores for the different types of passages, indicating good reliability for assessing resonance disorders in Punjabi speakers.
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Nosocomial infections or healthcare-associated infections (HAIs) are acquired under medical care in healthcare facilities. In hospital environments, the transmission of infectious diseases through textiles such as white coats, bed linen, curtains, and towels are well documented. Textile hygiene and infection control measures have become more important in recent years due to the growing concerns about textiles as fomites in healthcare settings.

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Beckwith-Wiedemann syndrome (BWS; MIM# 130650) is a well-characterized pediatric overgrowth disorder. In approximately 5% of the cases, it is caused by pathogenic variants in the (cyclin-dependent kinase inhibitor 1C). gene encodes for a protein p57 (KIP2) that acts as an inhibitor of cyclin-dependent kinases (CDK) that are expressed in the G and S-phase of the cell cycle, thus regulating cellular proliferation.

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The inferior pulmonary ligament and related connective tissue septa are a recognizable site of granulomatous lymphadenitis on CT of the chest and may mimic a lung parenchymal lesion. The anatomy of the inferior pulmonary ligament, CT appearances and potential etiologies of this entity are reviewed and illustrated.

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  • The text outlines the importance of archiving and sharing protein and nucleic acid structures for supporting research in life sciences.
  • It highlights the role of the Protein Data Bank in Europe (PDBe) in developing databases and web services to provide access to structural data, annotations, and visualization tools.
  • The document also discusses future directions for PDBe's services to address challenges posed by advancements in structure determination and modeling.
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Artificial intelligence (AI)-based computational techniques allow rapid exploration of the chemical space. However, representation of the compounds into computational-compatible and detailed features is one of the crucial steps for quantitative structure-activity relationship (QSAR) analysis. Recently, graph-based methods are emerging as a powerful alternative to chemistry-restricted fingerprints or descriptors for modeling.

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Fabrics serve as fomites in spreading nosocomial infections. As a patient is in close contact with bedsheets, it is important to assess the seasonal variation in bacterial diversity on these in healthcare units. The study was conducted to characterise the bacterial diversity on patients' bedsheets across 7 months in a primary healthcare unit.

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Importance: Pediatric alopecia areata (AA) prevalence and incidence data are key to understanding the natural history of this medical disease.

Objective: To determine the prevalence and incidence of AA in a pediatric population across time, age, sex, race and ethnicity, and geographic areas within the US.

Design, Setting, And Participants: In this multicenter cohort study conducted among 5 children's hospitals, data (January 2009 to November 2020) were collected from a standardized electronic health record (PEDSnet database, version 4.

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Laser therapy is an effective treatment that can be used in a wide range of cutaneous conditions in pediatric dermatology. It is an important tool to have in one's armamentarium. The parameters within each laser can vary greatly by the make and model of the laser, making it difficult to make settings generalizable.

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A pediatric dermatology expert working group performed a narrative review to describe care related to congenital melanocytic nevi (CMN) in neonates and infants. There are no published guidelines for most aspects of care, including routine skin care and visit intervals. Few guidelines exist for surgical management; newer recommendations favor conservative practice.

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Background: Contaminated textiles serve as fomites in healthcare settings. The extent of transfer of pathogens from fabrics depends on the surface properties of the 2 contact surfaces.

Methods: In the current study, the effect of surface energy and surface roughness of fabrics on the transfer of Escherichia coli and Staphylococcus aureus to and from textiles to surrogate skin were determined.

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