Local Temperature Measurement in Molecular Dynamics Simulations with Rigid Constraints.

Constraining molecules in simulations (such as with constant bond lengths and/or angles) reduces their degrees of freedom (DoF), which in turn affects temperature calculations in those simulations. When local temperatures are measured, e.g.

A Method for Efficiently Predicting the Radial Distribution Function and Osmotic Coefficients of Aqueous Electrolyte Solutions.

The prediction of the structural and thermodynamic properties of electrolyte solutions is critical for a huge range of practical situations where these solutions play a vital role. Theoretical models, such as the continuum solvent model, attempt to explain the behavior of solutions using a coarse-grained description of the interactions of species in the solution, whereas molecular simulations aim to directly compute the behavior of the solution, including the interactions between all ions and molecules in the system. Both methods have limitations: theoretical models are generally less accurate because they rely on assumptions, while molecular simulations require significant computational resources, particularly if higher accuracy is desired.

Reaction Dynamics of CO Hydrogenation on Iron Catalysts Using ReaxFF Molecular Dynamics Simulation.

The conversion of CO to hydrocarbons using catalysts is a promising route to utilize CO and produce more valuable chemicals in a sustainable manner. Recent studies have shown that iron-based catalysts perform well for the hydrogenation of CO. While the hydrogenation reaction mechanism in the gas phase is straightforward, when catalyzed by iron it has been demonstrated to involve various chemical transformations, and the selectivity and conversion are strongly dependent on the particle size.

Mechanism of Electrocatalytic H Evolution, Carbonyl Hydrogenation, and Carbon-Carbon Coupling on Cu.

Aqueous-phase electrocatalytic hydrogenation of benzaldehyde on Cu leads not only to benzyl alcohol (the carbonyl hydrogenation product), but Cu also catalyzes carbon-carbon coupling to hydrobenzoin. In the absence of an organic substrate, H evolution proceeds via the Volmer-Tafel mechanism on Cu/C, with the Tafel step being rate-determining. In the presence of benzaldehyde, the catalyst surface is primarily covered with the organic substrate, while H* coverage is low.

Development of Heteroatomic Constant Potential Method with Application to MXene-Based Supercapacitors.

We describe a method for modeling constant-potential charges in heteroatomic electrodes, keeping pace with the increasing complexity of electrode composition and nanostructure in electrochemical research. The proposed "heteroatomic constant potential method" (HCPM) uses minimal added parameters to handle differing electronegativities and chemical hardnesses of different elements, which we fit to density functional theory (DFT) partial charge predictions in this paper by using derivative-free optimization. To demonstrate the model, we performed molecular dynamics simulations using both HCPM and conventional constant potential method (CPM) for MXene electrodes with Li-TFSI/AN (lithium bis(trifluoromethane sulfonyl)imide/acetonitrile)-based solvent-in-salt electrolytes.

Effect of fluoro and hydroxy analogies of diglyme on sodium-ion storage in graphite: a computational study.

Diglyme co-intercalation with sodium ion (Na) into graphite can enable the use of graphite as a potential anode for sodium-ion batteries (NIBs). However, the presence of diglyme molecules in Na intercalated graphite limits Na storage capacity and increases volume changes. In this work, the effect of functionalising diglyme molecules with fluoro and hydroxy groups on Na storage properties in graphite were computationally studied.

Fluoropolymer-MOF Hybrids with Switchable Hydrophilicity for F MRI-Monitored Cancer Therapy.

Cancer theranostics that combines cancer diagnosis and therapy is a promising approach for personalized cancer treatment. However, current theranostic strategies suffer from low imaging sensitivity for visualization and an inability to target the diseased tissue site with high specificity, thus hindering their translation to the clinic. In this study, we have developed a tumor microenvironment-responsive hybrid theranostic agent by grafting water-soluble, low-fouling fluoropolymers to pH-responsive zeolitic imidazolate framework-8 (ZIF-8) nanoparticles by surface-initiated RAFT polymerization.

Constant Potential and Constrained Charge Ensembles for Simulations of Conductive Electrodes.

Constant potential method molecular dynamics simulation (CPM MD) enables the accurate modeling of atomistic electrode charges when studying the electrode-electrolyte interface at the nanoscale. Here, we extend the theoretical framework of CPM MD to the case in which the total charge of each conductive electrode is controlled, instead of their potential difference. We show that the resulting thermodynamic ensemble is distinct from that sampled with a fixed potential difference but they are rigorously related as conjugate ensembles.

Ultra-stable all-solid-state sodium metal batteries enabled by perfluoropolyether-based electrolytes.

Rechargeable batteries paired with sodium metal anodes are considered to be one of the most promising high-energy and low-cost energy-storage systems. However, the use of highly reactive sodium metal and the formation of sodium dendrites during battery operation have caused safety concerns, especially when highly flammable liquid electrolytes are used. Here we design and develop solvent-free solid polymer electrolytes (SPEs) based on a perfluoropolyether-terminated polyethylene oxide (PEO)-based block copolymer for safe and stable all-solid-state sodium metal batteries.

New Framework for Computing a General Local Self-Diffusion Coefficient Using Statistical Mechanics.

Widely applicable, modified Green-Kubo expressions for the local diffusion coefficient () are obtained using linear response theory. In contrast to past definitions in use, these expressions are statistical mechanical results. Molecular simulations of systems with anisotropic diffusion and an inhomogeneous density profile confirm the validity of the results.

Fully periodic, computationally efficient constant potential molecular dynamics simulations of ionic liquid supercapacitors.

Molecular dynamics (MD) simulations of complex electrochemical systems, such as ionic liquid supercapacitors, are increasingly including the constant potential method (CPM) to model conductive electrodes at a specified potential difference, but the inclusion of CPM can be computationally expensive. We demonstrate the computational savings available in CPM MD simulations of ionic liquid supercapacitors when the usual non-periodic slab geometry is replaced with fully periodic boundary conditions. We show how a doubled cell approach, previously used in non-CPM MD simulations of charged interfaces, can be used to enable fully periodic CPM MD simulations.

Heterocyclic Conjugated Polymer Nanoarchitectonics with Synergistic Redox-Active Sites for High-Performance Aluminium Organic Batteries.

The development of cost-effective and long-life rechargeable aluminium ion batteries (AIBs) shows promising prospects for sustainable energy storage applications. Here, we report a heteroatom π-conjugated polymer featuring synergistic C=O and C=N active centres as a new cathode material in AIBs using a low-cost AlCl /urea electrolyte. Density functional theory (DFT) calculations reveal the fused C=N sites in the polymer not only benefit good π-conjugation but also enhance the redox reactivity of C=O sites, which enables the polymer to accommodate four AlCl (urea) per repeating unit.

Equilibrium distribution functions: connection with microscopic dynamics.

Standard textbook derivations of the equilibrium distribution function rely on assumptions that may not satisfy all readers. Here, we present a straightforward approach to derive the equilibrium distribution function from the microscopic dynamics, and review how it can be used to obtain the expected expressions. In molecular dynamics simulations the equations of motion are often modified to simulate different ensembles or phenomena.

Thermoresponsive Supramolecular Assemblies from Dendronized Amphiphiles To Form Fluorescent Spheres with Tunable Chirality.

Balance between self-association of structural units and self-repulsion from crowding-induced steric hindrance accounts for the supramolecular assembly of the amphiphilic entities to form ordered structures, and solvation provides a toolbox to conveniently modulate the assemblies through differential interactions to various structural units. Here we report solvation-modulated supramolecular chiral assembly in aqueous solutions of amphiphilic dendronized tetraphenylethylenes (TPEs) with three-folded dendritic oligoethylene glycols (OEGs) through dipeptide Ala-Gly linkage. These dendronized amphiphiles can form supramolecular spheres with enhanced supramolecular chirality, which is tunable and dependent on solvation.

Dendronized polydiacetylenes photo-polymerization of supramolecular assemblies showing thermally tunable chirality.

Transformation of supramolecular chiral assemblies into covalent polymers integrates characteristics of supramolecular chemistry together with covalent entities, leading to fabrication of covalent chiral materials through versatile supramolecular chiral assemblies. Here, we report supramolecular assembly of an amphiphilic dendronized 10,12-pentacosadiynoic amide (PCDA) in aqueous solutions to form twisted ribbons, which were transferred into covalent dendronized polydiacetylenes (PDAs) photopolymerization. These supramolecular dendronized PCDA and the corresponding covalent dendronized PDAs showed unprecedent thermoresponsive properties.

Highly ordered macroporous dual-element-doped carbon from metal-organic frameworks for catalyzing oxygen reduction.

Multiple heteroatom-doped carbons with 3D ordered macro/meso-microporous structures have not been realized by simple carbonization of metal-organic frameworks (MOFs). Herein, ordered macroporous phosphorus- and nitrogen-doped carbon (M-PNC) is prepared successfully by carbonization of double-solvent-induced MOF/polystyrene sphere (PS) precursors accompanied with spontaneous removal of the PS template, followed by post-doping. M-PNC shows a high specific surface area of 837 m g, nitrogen doping of 3.

Exploring the effect of interlayer distance of expanded graphite for sodium ion storage using first principles calculations.

Expanded graphite (EG) has been shown to be able to store a significant amount of sodium ions. Understanding the alkali metal ion storage in EG is of importance for improving EG electrode performance. In this work, the effect of interlayer distance of pure EG on sodium ion storage was investigated using the density functional theory calculation method.

Investigation of the Ionic Liquid Graphene Electric Double Layer in Supercapacitors Using Constant Potential Simulations.

In this work, we investigate the effect of the cation structure on the structure and dynamics of the electrode-electrolyte interface using molecular dynamics simulations. A constant potential method is used to capture the behaviour of 1-ethyl-3-methylimidazolium bis (trifluoromethane)sulfonimide ([C2mim][NTf2]) and butyltrimethylammonium bis(trifluoromethane) sulfonimide ([N4,1,1,1][NTf2]) ionic liquids at varying potential differences applied across the supercapacitor. We find that the details of the structure in the electric double layer and the dynamics differ significantly, yet the charge profile and capacitance do not vary greatly.

Shaping the Future of Solid-State Electrolytes through Computational Modeling.

Advances and progress in computational research that aims to understand and improve solid-state electrolytes (SSEs) are outlined. One of the main challenges in the development of all-solid-state batteries is the design of new SSEs with high ion diffusivity that maintain chemical and phase stability and thereby provide a wide electrochemical stability window. Solving this problem requires a deep understanding of the diffusion mechanism and properties of the SSEs.

Low-Fouling Fluoropolymers for Bioconjugation and In Vivo Tracking.

The conjugation of hydrophilic low-fouling polymers to therapeutic molecules and particles is an effective approach to improving their aqueous stability, solubility, and pharmacokinetics. Recent concerns over the immunogenicity of poly(ethylene glycol) has highlighted the importance of identifying alternative low fouling polymers. Now, a new class of synthetic water-soluble homo-fluoropolymers are reported with a sulfoxide side-chain structure.

Doping Effects on the Performance of Paired Metal Catalysts for the Hydrogen Evolution Reaction.

Metal heteroatoms dispersed in nitrogen-doped graphene display promising catalytic activity for fuel cell reactions such as the hydrogen evolution reaction (HER). Here we explore the effects of the dopant concentration on the synergistic catalytic behavior of a paired metal atom active site comprising Co and Pt atoms that have been shown to be particularly active catalysts in these materials. The metals are coordinated to six atoms in a vacancy of N-doped graphene.

Coordination of Atomic Co-Pt Coupling Species at Carbon Defects as Active Sites for Oxygen Reduction Reaction.

Platinum (Pt) is the state-of-the-art catalyst for oxygen reduction reaction (ORR), but its high cost and scarcity limit its large-scale use. However, if the usage of Pt reduces to a sufficiently low level, this critical barrier may be overcome. Atomically dispersed metal catalysts with high activity and high atom efficiency have the possibility to achieve this goal.

Interaction of Boron Nitride Nanotubes with Aluminium: A Computational Study.

The interaction of boron nitride nanotubes (BNNTs) with Al has been investigated by means of quantum chemical calculations. Two model structures were used: a BNNT adsorbing a four atom Al cluster, and a BNNT adsorbed on Al surfaces of different crystallographic orientations. The BNNTs were modeled as: (i) pristine, and (ii) having a boron (B-) or a nitrogen (N-) vacancy defect.

How Low Nucleation Density of Graphene on CuNi Alloy is Achieved.

CuNi alloy foils are demonstrated to be one of the best substrates for synthesizing large area single-crystalline graphene because a very fast growth rate and low nucleation density can be simultaneously achieved. The fast growth rate is understood to be due the abundance of carbon precursor supply, as a result of the high catalytic activity of Ni atoms. However, a theoretical understanding of the low nucleation density remains controversial because it is known that a high carbon precursor concentration on the surface normally leads to a high nucleation density.

Influence of Constraints within a Cyclic Polymer on Solution Properties.

Cyclic polymers with internal constraints provide new insight into polymer properties in solution and bulk and can serve as a model system to explain the stability and mobility of cyclic biomacromolecules. The model system used in this work consisted of cyclic polystyrene structures, all with a nearly identical molecular weight, designed with 0-3 constraints located at strategic sites within the cyclic polymer, with either 4 or 6 branch points. The total number of branch points (or arms) within the cyclic ranged from 0 to 18.