Fungal trunk pathogens of fruit and nut tree crops: identification, characterization, detection and perspectives for a critical global issue.

Fungal trunk pathogens are a growing global issue, significantly affecting fruit and nut tree crop cultivation. These pathogens, mainly ascomycetes, belong to several families including Botryosphaeriaceae, Calosphaeriaceae, Cytosporaceae, Diaporthaceae, Diatrypaceae, Nectriaceae and Togniniaceae. The large number of species involved represent a challenge in clarifying the etiology of trunk diseases, further complicated by frequent co-infections of different fungi.

First report of nut rot caused by on almond in Italy.

Almond (Prunus dulcis) is an important nut crop widely grown in the Mediterranean region, including Italy. In September 2021, almonds cv. Tuono showing dark lesions affecting the hull were collected in Villar San Costanzo (Piedmont, Northwestern Italy).

associated with symptoms of dry lenticel rot, an emerging postharvest disease on apples in Italy.

Ramularia mali Videira & Crous is an emerging postharvest pathogen on apple (Malus × domestica Borkh.) in Italy and other apple producing countries (Prencipe et al. 2023).

Several secondary metabolite gene clusters in the genomes of ten Penicillium spp. raise the risk of multiple mycotoxin occurrence in chestnuts.

Penicillium spp. produce a great variety of secondary metabolites, including several mycotoxins, on food substrates. Chestnuts represent a favorable substrate for Penicillium spp.

Efficacy of Essential Oil Vapours in Reducing Postharvest Rots and Effect on the Fruit Mycobiome of Nectarines.

Nectarines can be affected by many diseases, resulting in significant production losses. Natural products, such as essential oils (EOs), are promising alternatives to pesticides to control storage rots. This work aimed to test the efficacy of biofumigation with EOs in the control of nectarine postharvest diseases while also evaluating the effect on the quality parameters (firmness, total soluble solids, and titratable acidity) and on the fruit fungal microbiome.

Soil, rhizosphere, and root microbiome in kiwifruit vine decline, an emerging multifactorial disease.

Kiwifruit vine decline syndrome (KVDS) is characterized by severe root system impairment, which leads to irreversible wilting of the canopy. Plants usually collapse rapidly from the appearance of the first aboveground symptoms, without recovery even in the following seasons. The syndrome has been negatively impacting kiwifruit yield in different areas of Italy, the main producing European country, since its first outbreak in 2012.

Molecular Characterization and Pathogenicity of spp. Associated with Black Rot of Sweet Cherries in Italy.

Black rot is limiting the production of sweet cherries in Italy. Dark brown to black patches and sunken lesions on fruits are the most common symptoms of black rot on sweet cherry fruits. We isolated 180 spp.

Molecular Characterization and Pathogenicity of Species Causing Nut Rot of Hazelnut in Italy.

Hazelnut (), a nut crop that is rapidly expanding worldwide, is endangered by a rot. Nut rot results in hazelnut defects. A survey was conducted in northwestern Italy during 2020 and 2021 to identify the causal agents of hazelnut rots.

Efficacy and Mechanisms of Action of Essential Oils' Vapours against Blue Mould on Apples Caused by .

Biofumigation with slow-release diffusers of essential oils (EOs) of basil, oregano, savoury, thyme, lemon, and fennel was assessed for the control of blue mould of apples, caused by . In vitro, the ability of the six EOs to inhibit the mycelial growth was evaluated at concentrations of 1.0, 0.

Effects of a prothioconazole- and tebuconazole-based fungicide on the yield, silage characteristics, and fungal mycobiota of corn harvested and conserved as whole-crop and high-moisture ear silages.

Aims: To analyze the effect of a prothioconazole- and tebuconazole-based fungicide on the yield and silage characteristics of whole-crop corn (WCC) and high-moisture ear corn (HMC) silages and on the fungal community dynamics from the harvest to aerobic exposure.

Methods And Results: Corn were untreated (NT) or treated (T) with a prothioconazole- and tebuconazole-based fungicide and harvested as WCC and HMC. Silages were conserved for 60 and 160 d and subjected to an aerobic stability test.

Characterization of Species Involved in the Establishment and Development of Kiwifruit Vine Decline Syndrome.

Since 2012, the kiwifruit vine decline syndrome (KVDS) has progressively compromised Italian kiwifruit orchards. Different abiotic and biotic factors have been associated with the establishment and development of KVDS. During monitoring of orchards affected by KVDS in north-western Italy during 2016-2019, 71 spp.

Essential Oils Reduce Grey Mould Rot of Apples and Modify the Fruit Microbiome during Postharvest Storage.

is the causal agent of grey mould rot of apples. The efficacy of biofumigation with thyme (), savoury (), and basil () essential oils (EOs) at 1%, 0.5%, and 0.

A Quantitative Real-Time PCR Assay for Early Detection and Quantification of , an Emerging Pathogen of Apple Causing Dry Lenticel Rot.

is an emerging pathogen of apple () causing dry lenticel rot. No preventive measures have been adopted due to the lack of knowledge about the life cycle and epidemiology of this pathogen. In a preliminary survey to identify the agents of dry lenticel rot of apple, was constantly associated with the disease Using isolates from this survey, a SYBR Green quantitative PCR (qPCR) assay was developed, using calmodulin as target gene, for the detection and quantification of in apple fruit.

Pathogenicity, Molecular Characterization, and Mycotoxigenic Potential of spp. Agents of Black Spots on Fruit and Leaves of in Italy.

Brown and black spots, caused by and species, are important fungal diseases affecting European pear () in orchards. Both fungal genera cause similar symptoms, which could favor misidentification, but spp. are increasingly reported due to the changing climatic conditions.

Sequencing of non-virulent strains of Fusarium fujikuroi reveals genes putatively involved in bakanae disease of rice.

Bakanae, one of the most important diseases of rice, is caused by the fungal pathogen Fusarium fujikuroi. The elongation of internodes is the most common symptom induced by the pathogen, and it is related to the production of gibberellins. Despite this, the pathogenicity mechanism of F.

First Report of Brown Rot Caused by on Apple in Italy.

Brown rot is a common apple disease in Italy, caused by Monilinia fructicola, M. laxa and M. fructigena (Martini et al.

CRISPR-Cas9-Based Discovery of the Verrucosidin Biosynthesis Gene Cluster in .

, commonly found on food matrices, is a mycotoxigenic species able to produce a neurotoxin called verrucosidin. This methylated α-pyrone polyketide inhibits oxidative phosphorylation in mitochondria and thereby causes neurological diseases. Despite the importance of verrucosidin as a toxin, its biosynthetic genes have not been characterized yet.

First Report of causing postharvest rot on tomato () in Italy.

Italy is the largest tomato (Solanum lycopersicum)-producing country in Europe with a cultivated area of 97,092 ha and a production of 5,798,103 tons/year in 2018 (FAOSTAT, 2020). During July 2020, a postharvest rot occurred in fresh tomatoes 'Piccadilly' cultivated in Sicily (Pachino, RG) and commercialized in Northern Italy (Torino, TO). Affected fruit showed circular black rot on the blossom end.

First Multi-Target Application of Exclusion Net in Nectarine Orchards: Effectiveness against Pests and Impact on Beneficial Arthropods, Postharvest Rots and Fruit Quality.

Over the past few years, there has been an increasing interest in the development of alternative pest control strategies to reduce environmental impact. In this contest, exclusion nets have been evaluated as a sustainable alternative to pesticides. In this study, the use of a photoselective exclusion net was investigated in semi-field conditions as a potential strategy to protect nectarine orchards from different pests (i.

Global analysis of the apple fruit microbiome: are all apples the same?

We present the first worldwide study on the apple (Malus × domestica) fruit microbiome that examines questions regarding the composition and the assembly of microbial communities on and in apple fruit. Results revealed that the composition and structure of the fungal and bacterial communities associated with apple fruit vary and are highly dependent on geographical location. The study also confirmed that the spatial variation in the fungal and bacterial composition of different fruit tissues exists at a global level.

First report of , agent of powdery mildew, on hazelnut () in Romania.

Romania has an area dedicated to hazelnut ( L.), covering 890 hectares as of 2019. During October 2020, powdery mildew symptoms were observed on the upper side of leaves of hazelnut 'Tonda di Giffoni' in two commercial orchards in Dudeștii Vechi, Romania (Fig.

Metagenomics Approaches for the Detection and Surveillance of Emerging and Recurrent Plant Pathogens.

Globalization has a dramatic effect on the trade and movement of seeds, fruits and vegetables, with a corresponding increase in economic losses caused by the introduction of transboundary plant pathogens. Current diagnostic techniques provide a useful and precise tool to enact surveillance protocols regarding specific organisms, but this approach is strictly targeted, while metabarcoding and shotgun metagenomics could be used to simultaneously detect all known pathogens and potentially new ones. This review aims to present the current status of high-throughput sequencing (HTS) diagnostics of fungal and bacterial plant pathogens, discuss the challenges that need to be addressed, and provide direction for the development of methods for the detection of a restricted number of related taxa (specific surveillance) or all of the microorganisms present in a sample (general surveillance).

Presence of Powdery Mildew Caused by on Hazelnut () in Italy.

Hazelnut (Corylus avellana) is widely grown in Italy, which is the second largest producer worldwide with 132,700 tonnes harvested from 78,593 hectares (FAOSTAT, 2018 ). Powdery mildew caused by Phyllactinia guttata has been reported in Italy and in other European countries, but recently in Austria, Switzerland and in central Europe a new species was discovered (Voglmayr et al., 2020; Beenken, 2020).

Monitoring and Surveillance of Aerial Mycobiota of Rice Paddy through DNA Metabarcoding and qPCR.

The airborne mycobiota has been understudied in comparison with the mycobiota present in other agricultural environments. Traditional, culture-based methods allow the study of a small fraction of the organisms present in the atmosphere, thus missing important information. In this study, the aerial mycobiota in a rice paddy has been examined during the cropping season (from June to September 2016) using qPCRs for two important rice pathogens ( and ) and by using DNA metabarcoding of the fungal ITS region.