Photosynthetic light response curves serve as powerful mathematical tools for quantitatively describing the rate of photosynthesis of plants in response to changes in irradiance. However, in practical applications, the daunting task of selecting an appropriate nonlinear model to accurately fit these curves persists as a significant challenge. Thus, there arises a need for a method to systematically evaluate the efficacy of such models.
View Article and Find Full Text PDFA 2-dimensional (2D) egg-shape equation can be used to construct a 3D egg geometry based on the hypothesis that an egg is a solid of revolution, which helps to calculate egg volume and surface area. The parameters in the 2D egg-shape equation are potentially valuable for providing a clue to the ecology and evolution of avian eggs. In this study, the 5-parameter Preston equation (PE), the 4-parameter Troscianko equation (TE), and another 2 egg-shape equations, were compared in describing real 2D egg-shape data of 300 Gallus gallus domesticus eggs and additional 50 eggs that represented the variation in avian egg geometries.
View Article and Find Full Text PDFhas caused significant losses in forestry productivity in Indonesia and neighboring nations. It also infects horticultural trees, but the host range of individual isolates of is poorly studied. So, this study aimed to better understand the potential host range and evaluate aggressiveness against forestry and fruit tree species of isolated from various tree species in Indonesia.
View Article and Find Full Text PDFMeasuring the inequality of leaf area distribution per plant (ILAD) can provide a useful tool for quantifying the influences of intra- and interspecific competition, foraging behavior of herbivores, and environmental stress on plants' above-ground architectural structures and survival strategies. Despite its importance, there has been limited research on this issue. This paper aims to fill this gap by comparing four inequality indices to measure ILAD, using indices for quantifying household income that are commonly used in economics, including the Gini index (which is based on the Lorenz curve), the coefficient of variation, the Theil index, and the mean log deviation index.
View Article and Find Full Text PDFPeople who take a walk in urban parks, including or adjacent to a water body such as a river, a pond, or a lake, usually suffer from mosquito bites in summer and early autumn. The insects can negatively affect the health and mood of these visitors. Prior studies about the effects of landscape composition on the abundance of mosquitos have usually taken stepwise multiple linear regression protocols to look for the landscape variables that can significantly affect the abundance of mosquitos.
View Article and Find Full Text PDFLeaf shape and size can vary between hybrids and their parents. However, this has seldom been quantitatively tested. Photinia × fraseri is an important landscaping plant in East Asia as a hybrid between evergreen shrubs P.
View Article and Find Full Text PDFMany natural objects exhibit radial or axial symmetry in a single plane. However, a universal tool for simulating and fitting the shapes of such objects is lacking. Herein, we present an R package called 'biogeom' that simulates and fits many shapes found in nature.
View Article and Find Full Text PDFPaneer is a fresh, soft ready-to-eat cheese that is susceptible to Listeria monocytogenes contamination, exemplified by product recalls in Australia, Canada, and the USA. Previous research demonstrates that L. monocytogenes grows in paneer, however there are no paneer-specific predictive models that quantify the effect of environmental conditions on L.
View Article and Find Full Text PDFFood regulatory authorities permit the use of Time as Public Health Control (TPHC) for handling foods that potentially support the growth of pathogenic bacteria. Considering the widespread use of TPHC in food service operations, few reports quantitatively describe potential pathogen growth when these protocols are implemented. A worst-case growth rate model was built from the highest growth rates predicted by ComBase broth-based models for six pathogens.
View Article and Find Full Text PDFCarnobacterium maltaromaticum, Brochothrix thermosphacta and Serratia liquefaciens are common spoilage organisms found within the microbiome of refrigerated vacuum-packaged (VP) beef. Extending and predicting VP beef shelf-life requires knowledge about how spoilage bacteria growth is influenced by environmental extrinsic and intrinsic factors. Multifactorial effects of pH, lactic acid (LA) and glucose on growth kinetics were quantified for C.
View Article and Find Full Text PDFThis study examined the effects of seven constant and fluctuating temperature profiles with corresponding averages of 12 to 38°C on the life history of the Punjab, Pakistan-sourced Tamarixia radiata (Waterston) released in California for biological control of Diaphorina citri Kuwayama. One linear and seven nonlinear regression functions were fit to egg-to-adult development rate data to characterize thermal performance curves. Temperature fluctuations significantly affected both development and longevity of T.
View Article and Find Full Text PDFThe effects of fluctuating and constant temperatures on the development and longevity of Diaphorencyrtus aligarhensis (Shafee, Alam, and Argarwal) (Hymenoptera: Encyrtidae), a parasitoid sourced from Pakistan and released in California for the classical biological control of Diaphorina citri Kuwayama (Hemiptera: Liviidae), were examined. The influence of six fluctuating temperatures that averaged 15, 20, 25, 30, 32, and 35°C, over 24 h on the development times and longevity of male and female D. aligarhensis were quantified and compared to six constant temperatures set at the same average temperatures.
View Article and Find Full Text PDFis frequently associated with foods having extended shelf-life due to its inhibitory activity to other bacteria. The quantification of such inhibition interactions affected by various environmental factors is limited. This study investigated the effect of environmental factors relevant to vacuum-packaged beef on inhibition between two model isolates of , D0h and D8c, specifically D8c sensitivity to D0h inhibition and D0h inhibitor production.
View Article and Find Full Text PDFFungal diversity of Australian eucalypt forests remains underexplored. We investigated the ectomycorrhizal (EcM) fungal community characteristics of declining temperate eucalypt forests in Tasmania. Within this context, we explored the diversity of EcM fungi of two forest types in the northern highlands in the east and west of the island.
View Article and Find Full Text PDFHydnum is a fungal genus proposed by Linnaeus in the early time of modern taxonomy. It contains several ectomycorrhizal species which are commonly consumed worldwide. However, Hydnum is one of the most understudied fungal genera, especially from a molecular phylogenetic view.
View Article and Find Full Text PDFWe identify and describe the distribution of temperature-dependent specific growth rates for life on Earth, which we term the biokinetic spectrum for temperature. The spectrum has the potential to provide for more robust modeling in thermal ecology since any conclusions derived from it will be based on observed data rather than using theoretical assumptions. It may also provide constraints for systems biology model predictions and provide insights in physiology.
View Article and Find Full Text PDFFungi play major roles in ecosystem processes, but the determinants of fungal diversity and biogeographic patterns remain poorly understood. Using DNA metabarcoding data from hundreds of globally distributed soil samples, we demonstrate that fungal richness is decoupled from plant diversity. The plant-to-fungus richness ratio declines exponentially toward the poles.
View Article and Find Full Text PDFThe genus Singerocybe (Tricholomataceae, Agaricales, Basidiomycota) has been the subject of controversy since its proposal in 1988. Its taxonomic foundation, species circumscription and geographical distribution have not yet been examined with molecular sequence data. In this study phylogenetic analyses on this group of fungi were conducted based on collections from Europe, eastern Asia, southern Asia, North America and Australia, with four nuclear markers, ITS, nrLSU, tef1-α and rpb2.
View Article and Find Full Text PDFLife on Earth is capable of growing from temperatures well below freezing to above the boiling point of water, with some organisms preferring cooler and others hotter conditions. The growth rate of each organism ultimately depends on its intracellular chemical reactions. Here we show that a thermodynamic model based on a single, rate-limiting, enzyme-catalysed reaction accurately describes population growth rates in 230 diverse strains of unicellular and multicellular organisms.
View Article and Find Full Text PDFBackground: Mathematical models exist that quantify the effect of temperature on poikilotherm growth rate. One family of such models assumes a single rate-limiting 'master reaction' using terms describing the temperature-dependent denaturation of the reaction's enzyme. We consider whether such a model can describe growth in each domain of life.
View Article and Find Full Text PDFIn this study, ethyl acetate and aqueous fractions from 117 collections of Australian macrofungi belonging to the mushroom genus Cortinarius were screened for antimicrobial activity against Staphylococcus aureus and Pseudomonas aeruginosa. Overall, the lipophilic fractions were more active than the aqueous fractions. The ethyl acetate fractions of most or all collections of 13 species, namely Cortinarius ardesiacus, C.
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