Publications by authors named "David Phalen"

Q fever is a zoonosis caused by , primarily affecting those in close contact with domestic ruminants, the main source of human infection. has also been detected in various wildlife species globally. In Australia, serological and molecular studies have shown exposure to and infection by in macropods, bandicoots, and koalas.

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Mating systems, influenced by the social and ecological environment and individual attributes, are fundamental components of animal social organisation, impacting behaviour, animal distribution, ecosystem processes, individual reproductive success, and population dynamics. Bats are of particular interest for studies of mating systems as they are thought to exhibit a greater diversity in mating systems than any other mammalian order, and thus make great models for improving our fundamental understanding of causes and consequences of social organisation. Here, we review the current knowledge of bat mating systems.

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Outbreaks of sarcoptic mange are sporadically reported in koala populations across Australia, but disease characteristics (e.g., distribution across the body) remain poorly understood.

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Cutaneous plantar papillomas are a relatively common lesion of wild psittacine birds in Australia. Next-generation sequencing technology was used to investigate the potential aetiologic agent(s) for a plantar cutaneous papilloma in a wild rainbow lorikeet (). In the DNA from this lesion, two novel viral sequences were detected.

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Aviadenoviruses are widespread in wild birds but rarely cause disease in nature. However, when naïve species are exposed to poultry or aviaries, aviadenoviruses can lead to disease outbreaks. This study characterised a novel aviadenovirus infection in a native Australian bird, the tawny frogmouth (Podargus strigoides) during an outbreak investigation.

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Article Synopsis
  • Reliable info on how many Christmas Island flying-foxes (CIFF) are left is super important for saving them.
  • Researchers used a special method called close-kin mark-recapture to study these bats, since they're hard to find and count.
  • They found that there are about 2,050 adult female CIFFs left and learned that not many male bats are helping to make babies, which is key for planning how to protect them better.
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Australian wildlife rehabilitators (AWR) are at risk of contracting Q fever, a serious zoonotic disease caused by Coxiella burnetii. Despite Australian government recommendations for AWR to receive Q fever vaccination (QFV), and the availability of a safe and effective vaccine in Australia, shortfalls in vaccine uptake have been observed in AWR. This study aimed to determine factors associated with QFV status and describe AWR attitudes and potential barriers towards QFV.

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Australian wildlife rehabilitators (AWR) are at increased risk of developing Q fever, a serious zoonotic disease caused by the intracellular bacterium Coxiella burnetii. Previous studies have suggested that Australian wildlife may be a potential C. burnetii infection source for humans.

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Article Synopsis
  • Insular bats like the Christmas Island flying-fox (CIFF) struggle to maintain viruses due to their small populations and isolation, relying instead on chronic infections or temporary immunity.
  • Research involving 228 CIFFs found evidence of a pararubulavirus and a betacoronavirus, but showed no active circulation of other viruses or any detected viral nucleic acids.
  • The study highlights the need for further research on infection dynamics in the CIFF and suggests implementing biosecurity measures to prevent new diseases from affecting this vulnerable bat population.
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This study reports a complete genome sequence of a variant of psittacine chaphamaparvovirus 2 detected in kidney tissue from an Australian boobook (Ninox boobook), compiled using next-generation sequencing. The genome was 4,312 bp long, encoding four open reading frames. The detection of this variant in boobook represents a significant host-switching event.

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The beak and feather disease virus (BFDV) is a pathogen of psittacine birds. BFDVs infecting nonpsittacine birds remain largely uncharacterized. We report the genome of a BFDV from a boobook owl (Ninox boobook), a nonpsittacine bird.

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Elephant endotheliotropic herpesviruses (EEHVs) are important causes of death in both captive and wild Asian elephants (). Nothing is known about the prevalence of EEHVs in wild or domestic elephants in China. To determine if EEHVs are present in elephants in China, 126 wild elephants from three populations and 202 captive individuals from zoos ( = 155) and the Wild Elephant Valley ( = 47) were screened using semi-nested polymerase chain reaction assays with EEHV-redundant and EEHV1/4/5-specific primers.

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A recent publication in Parasitology Research by (Old et al. Parasitol Res 120:1077-1090, 2021) raises the topical and often controversial issue of the treatment of wildlife by personnel with little or no formal scientific training (e.g.

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Xanthogranulomatosis is an inflammatory lesion characterized by lipid-containing macrophages, extracellular lipid, hemorrhage, and necrosis. We describe disseminated intracoelomic xanthogranulomatosis in 5 eclectus parrots () and 2 budgerigars (). Postmortem, clinicopathologic, and historical case material was reviewed.

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Article Synopsis
  • Siadenoviruses have been found in birds globally, with only nine fully sequenced and 30 partial sequences, mostly from wild Australian birds; some are disease-causing, while many lead to subclinical infections.
  • Psittacine siadenovirus 2 (PsSiAdV-F), detected in the critically endangered orange-bellied parrot, has a 25,392 bp genome with 25 putative genes and shows notable genetic divergence from other siadenoviruses.
  • Phylogenetic analysis indicates that PsSiAdV-F evolved early in the siadenovirus lineage, suggesting further research is needed to explore its presence in wild Australian parrots and better understand siadenovirus evolution.
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The disease caused by Enterococcus lacertideformus is multisystemic and ultimately fatal. Since its emergence, the bacterium has significantly impacted the captive breeding programs of the extinct in the wild Christmas Island Lister's gecko (Lepidodactylus listeri) and blue-tailed skink (Cryptoblepharus egeriae). The bacterium's pathogenicity, inability to grow in-vitro, and occurrence beyond the confines of Christmas Island necessitated the development of an experimental infection and treatment model.

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Rickettsioses are arthropod-borne zoonotic diseases, several of which occur in Australia. This study aimed to assess the exposure levels and risk factors for spp. among Australian wildlife rehabilitators (AWRs) using serology, PCR and a questionnaire.

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Habitat loss and alteration are two of the biggest threats facing insular flying-foxes. Altered habitats are often re-vegetated with introduced or domestic plant species on which flying-foxes may forage. However, these alien food plants may not meet the nutritional requirements of flying-foxes.

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is an ascomycete yeast often found at the isthmus of the ventriculus and proventriculus of infected birds. Antemortem diagnosis has traditionally involved direct visualization of organisms on wet-mount or gram-stained fecal preparations, cloacal and crop swabs, or by both methods; however, different in-clinic diagnostic techniques have never been compared to establish an optimum test for the identification of in an avian patient. We compared 5 microscopically evaluated diagnostic testing methods: fecal Gram's stain, direct fecal wet preparation, macro suspension technique, macro suspension with Gram's stain, and macro suspension stained with new methylene blue.

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An indirect immunofluorescence serologic assay, PCR assay, and histopathology were used to screen for psittaciform orthobornaviruses (PaBV) in wild Cacatuidae in Victoria, Australia. Anti-PaBV antibodies were detected, but PCR and histopathology did not detect PaBV. This study presents the first evidence of PaBV in wild birds in Australia.

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Article Synopsis
  • A whole genome analysis was completed on a newly identified species of enterococci associated with severe disease in endangered reptiles from Christmas Island, focusing on its genetic features and pathogenic traits.* -
  • The bacterium's genome is characterized by a circular chromosome comprising approximately 2.4 million base pairs, 2,321 genes, and specific elements related to antimicrobial resistance and virulence, suggesting limited exposure to modern antibiotics.* -
  • Unique genomic features indicative of potential biofilm formation and metabolic functions were discovered, revealing the likely evolutionary relationships of this pathogen to other enterococci, with implications for understanding its pathogenicity and resistance mechanisms.*
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The Eastern spinebill (), a passerine bird in the family (honeyeaters), a dominant group of birds in Australia and New Guinea. The aim of this study was to sequence the complete mitochondrial genome of the Eastern spinebill and use its sequence to better define the phylogeny of this species. The complete mitogenome sequence of was circular and 16,614 bp in length, and its architecture was conserved in comparison to other mitogenome sequences under the family .

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The Christmas Island flying-fox (Pteropus natalis) is the last native mammal on Christmas Island and its population is in decline. Phosphate mining occurs across much of the eastern side of Christmas Island. The phosphate deposits are naturally rich in cadmium, and potentially other metals, which may be threatening the Christmas Island flying-fox population.

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