Publications by authors named "David Gibson"

Grasslands converted to agricultural land use can be reestablished by sowing seeds of native species and temporal dynamics of diversity under altered climate can inform community assembly in the context of global change. We quantified three aspects of diversity (species richness, phylogenetic diversity, and functional diversity) in restored prairie plots sown with different ecotypes of two dominant grass species and manipulated rainfall to understand the relative importance of abiotic filtering and population source of dominant species on community assembly. We also evaluated the contributions of intra- and interspecific variations in functional traits across plots sown with different ecotypes of dominant species.

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  • Cellular senescence refers to the permanent halt of cell growth caused by factors like genetic mutations or damage, and it's linked to aging and diseases like diabetes and heart issues.
  • The study aimed to identify specific senescence biomarkers in patients with acute kidney injury (AKI) and chronic kidney disease (CKD) using OLINK proteomics.
  • The proteins CKAP4 and PTX3 were found to be significantly elevated in AKI and CKD patients, suggesting they could serve as important indicators for kidney disease progression.
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  • The COVID-19 pandemic has challenged global healthcare systems, prompting research into genetic and proteomic markers for better patient prognosis.
  • A study analyzed the protein and genetic profiles of 400 hospitalized and 483 non-hospitalized COVID-19 patients, uncovering 224 proteins linked to inflammation and immunity.
  • Key proteins like LGALS9 and LAMP3 were identified as significant predictors of severe illness, suggesting these markers could serve as important tools for understanding and treating COVID-19 outcomes.
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Aims: Phytocannabinoids and terpenes from Cannabis sativa have demonstrated limited anti-inflammatory and analgesic effects in several inflammatory conditions. In the current study, we test the hypothesis that phytocannabinoids exert immunomodulatory effects in vitro by decreasing inflammatory cytokine expression and activation.

Key Methods: CD3/CD28 and lipopolysaccharide activated peripheral blood mononuclear cells (PBMCs) from healthy donors (n = 6) were treated with phytocannabinoid compounds and terpenes in vitro.

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  • Endoscopic submucosal dissection (ESD) is being considered for treating large nonpedunculated colorectal polyps (LNPCPs) to manage potential low-risk cancers, but its effectiveness in the right colon is unclear.
  • A study analyzed over 3,000 cases, finding that only 2.6% of patients who underwent endoscopic resection (ER) had cancers, with just 0.78% being classified as low-risk.
  • The results suggest that a universal ESD approach for right colon LNPCPs may not significantly improve patient outcomes due to the low prevalence of treatable low-risk cancers.
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Background And Aim: C-reactive protein (CRP)-to-albumin ratio (CAR) is a novel score with prognostic value in inflammatory conditions. This study assessed the performance of CAR as an objective marker of disease activity and prediction of subtherapeutic infliximab trough levels in patients with inflammatory bowel disease (IBD).

Methods: A retrospective study was conducted on three different patient cohorts with IBD: patients who had (i) fecal calprotectin (FC) measurements; (ii) Mayo Endoscopic Scores; and (iii) infliximab trough levels available.

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Background: MGMT (O 6 -methylguanine-DNA methyltransferase) promoter methylation is a commonly assessed prognostic marker in glioblastoma (GBM). Epigenetic silencing of the MGMT gene by promoter methylation is associated with greater overall and progression free survival with alkylating agent regimens. To date, there is marked heterogeneity in how MGMT promoter methylation is tested and which CpG sites are interrogated.

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  • Health organizations are struggling to control the spread of COVID-19, especially regarding high-risk individuals who may need hospitalization, making it crucial to identify key biomarkers related to severe illness.
  • The COVID-19 Response Study intends to conduct a multiomics analysis using blood and saliva samples from 1,000 recovered individuals to uncover host susceptibility factors related to SARS-CoV-2 and severe COVID-19 outcomes.
  • The study includes a cohort of 519 participants in Northern Ireland with confirmed SARS-CoV-2 infections, as well as a follow-up group to track symptoms and immune responses over the year post-infection, incorporating extensive data collection and analysis methods.
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Background: With the spread of SARS-CoV-2 impacting upon public health directly and socioeconomically, further information was required to inform policy decisions designed to limit virus spread during the pandemic. This study sought to contribute to serosurveillance work within Northern Ireland to track SARS-CoV-2 progression and guide health strategy.

Methods: Sera/plasma samples from clinical biochemistry laboratories were analysed for anti-SARS-CoV-2 antibodies.

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Rheumatoid arthritis (RA) is a chronic autoimmune disorder that has a significant impact on quality of life and work capacity. Treatment of RA aims to control inflammation and alleviate pain; however, achieving remission with minimal toxicity is frequently not possible with the current suite of drugs. This review aims to summarise current treatment practices and highlight the urgent need for alternative pharmacogenomic approaches for novel drug discovery.

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  • The study investigated the relationship between adalimumab (ADA) drug levels and Crohn's disease (CD) activity in patients who experienced a loss of response and underwent dose intensification.
  • It analyzed a group of 131 CD patients over five years, measuring ADA levels at critical points after the dose increase and assessing the impact on clinical and objective remission.
  • Findings indicate that higher ADA levels monitored at 6 and 12 months after dose-intensification are linked to improved remission rates, suggesting that post-treatment monitoring is more informative than initial baseline levels.
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  • Soil seedbanks play a vital role in agricultural ecosystems, but research on their structure and biodiversity in herbicide-resistant crops is limited, particularly regarding functional traits.* -
  • A 6-year study explored how region, crop system, and weed management strategies affect weed seedbank species richness and functional trait diversity, revealing differences based on regional and crop system interactions.* -
  • The study suggests that agricultural management strategies should incorporate weed functional traits and consider the long-term effects of transgenic crop systems on weed dynamics and resistance.*
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Introduction: Limbal Stem Cell Deficiency (LSCD) is a blinding corneal disease characterized by the loss of function or deficiency in adult stem cells located at the junction between the cornea and the sclera (i.e., the limbus), namely the limbal stem cells (LSCs).

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Background: Epigenetic inhibition of the () gene has emerged as a clinically relevant prognostic marker in glioblastoma (GBM). Methylation of the promoter has been shown to increase chemotherapy efficacy. While traditionally reported as a binary marker, recent methodological advancements have led to quantitative methods of measuring promoter methylation, providing clearer insight into its functional relationship with survival.

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  • Researchers are exploring a new strategy for creating enantioselective transformations by making common ligand scaffolds anionic and pairing them with chiral cations, exemplified by the enantioselective borylation of arenes using a quinine-derived cation.
  • * A computational study has been initiated to analyze noncovalent interactions and mechanisms involved in the enantioselective desymmetrization of different substrate classes, revealing significant differences in their interactions.
  • * The findings suggest that prochiral phosphine oxide substrates, which do not have hydrogen bond donor functionality, can achieve notable enantioselectivity through interactions with chiral cations, potentially opening new avenues in asymmetric transition-metal catalysis.
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Background: Central nervous system (CNS) WHO grade 2 low-grade glioma (LGG) patients are at high risk for recurrence and with unfavorable long-term prognosis due to the treatment resistance and malignant transformation to high-grade glioma. Considering the relatively intact systemic immunity and slow-growing nature, immunotherapy may offer an effective treatment option for LGG patients.

Methods: We conducted a prospective, randomized pilot study to evaluate the safety and immunological response of the multipeptide IMA950 vaccine with agonistic anti-CD27 antibody, varlilumab, in CNS WHO grade 2 LGG patients.

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Case: A 78 year-old man fell 6 months after Sivash-range of motion (S-ROM) total hip arthroplasty (THA), after which he developed hip pain and external rotation deformity. Imaging showed stem malrotation in relative retroversion. Revision THA was delayed because of medical issues, occurring 1.

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Purpose: The purpose of this study was to evaluate the safety and efficacy of low dose cannabidiol (CBD; Epidiolex) as adjunctive therapy for idiopathic adult-onset blepharospasm (BPS), as well as develop a novel objective assessment methodology to gauge response.

Methods: Prospective, randomized, double-masked, placebo-controlled crossover design of 6 months duration of 12 patients with BPS undergoing routine maximal botulinum toxin (BTX) therapy and experiencing breakthrough symptoms. Participants received their standard BTX every 3 months and were randomized to group A = CBD daily in cycle 1, followed by placebo in cycle 2 or group B = placebo followed by CBD.

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Introduction: This study aimed to determine whether healthcare markets with higher social vulnerability have lower access to high-quality hip and knee replacement hospitals and whether hospitals that serve a higher percentage of low-income patients are less likely to be designated as high-quality.

Methods: This cross-sectional study used 2021 Centers for Medicare and Medicaid Services outcome measures and 2022 Joint Commission (JC) process-of-care measures to identify hospitals performing high-quality hip and knee replacement. A total of 2,682 hospitals and 304 healthcare markets were included.

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This article reports on a trace-based assessment of approaches to learning used by middle school aged children who interacted with NASA Mars Mission science, technology, engineering and mathematics (STEM) games in , an online game environment with 8 million registered young learners. The learning objectives of two games included awareness and knowledge of NASA missions, developing knowledge and skills of measurement and scaling, applying measurement for planetary comparisons in the solar system. Trace data from 1361 interactions were analysed with nonparametric multidimensional scaling methods, which permitted visual examination and statistical validation, and provided an example and proof of concept for the multidimensional scaling approach to analysis of time-based behavioural data from a game or simulation.

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Disease activity in rheumatoid arthritis (RA) is influenced by activation of circulating and synovial immune cells. Regulatory T cells (Tregs) and monocytes are key cells that drive inflammation in RA. This study investigated if a relationship exists between disease activity in RA and circulating Treg and monocyte numbers and phenotypes.

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We investigated the association between a wide range of comorbidities and COVID-19 in-hospital mortality and assessed the influence of multi morbidity on the risk of COVID-19-related death using a large, regional cohort of 6036 hospitalized patients. This retrospective cohort study was conducted using Patient Administration System Admissions and Discharges data. The International Classification of Diseases 10th edition (ICD-10) diagnosis codes were used to identify common comorbidities and the outcome measure.

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Background: Therapeutic monitoring of infliximab is limited by the time lag between drug-level measurement and dose adjustment, along with the cost of dose escalation. Strategies for dose reduction in stable patients on maintenance infliximab at supratherapeutic levels are uncertain. This study determined the feasibility of a pharmacist-driven strategy for immediate dose adjustment using a sliding scale at the point of care in stable patients with inflammatory bowel disease on maintenance therapy.

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Obesity, defined as a body mass index (BMI) >30, is associated with an increased likelihood of osteoarthritis and need for total joint arthroplasty (TJA). Unfortunately, the morbidly obese population has a higher risk of postoperative complications. For some surgeons, patient selection criteria for TJA includes BMI<40.

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