Publications by authors named "David E Hacker"

Article Synopsis
  • Peptide macrocyclization enhances the development of more effective and stable protein ligands, making it crucial in peptide drug discovery.
  • The study involved creating a diverse peptide library with different ring sizes and shapes (monocyclic, bicyclic, and linear) through mRNA display, followed by in vitro selection against streptavidin.
  • The analysis revealed valuable insights into the binding affinities of different peptide topologies and their performance under protease challenges, contributing to our understanding of peptide diversity in drug discovery.
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Article Synopsis
  • The amino acid 4-fluorohistidine has a lower pK than histidine, giving proteins that use it unique properties.
  • Researchers have optimized a method to synthesize 4-fluorohistidine and confirmed it effectively replaces histidine in translation processes.
  • Peptides with 6×-fluorohistidine tags can be specifically isolated from mixtures containing histidine-tagged proteins using nickel resin.
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Highly constrained peptides such as the knotted peptide natural products are promising medicinal agents because of their impressive biostability and potent activity. Yet, libraries of highly constrained peptides are challenging to prepare. Here, we present a method which utilizes two robust, orthogonal chemical steps to create highly constrained bicyclic peptide libraries.

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Many intracellular protein-protein interactions are mediated by the phosphorylation of serine, and phosphoserine-containing peptides can inhibit these interactions. However, hydrolysis of the phosphate by phosphatases, and the poor cell permeability associated with phosphorylated peptides has limited their utility in cellular and in vivo contexts. Compounding the problem, strategies to replace phosphoserine in peptide inhibitors with easily accessible mimetics (such as Glu or Asp) routinely fail.

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Cyclization confers several advantages to peptides, cumulatively serving to make them more drug-like. In this protocol, cyclic peptides are generated via bis-alkylation of cysteine-containing peptides using α,α'-dibromo-m-xylene. The reactions are robust and high yielding.

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