Publications by authors named "David Deperthes"

Liquefaction of human semen involves proteolytic degradation of the seminal coagulum and release of motile spermatozoa. Several members of human kallikrein-related peptidases (KLKs) have been implicated in semen liquefaction, functioning through highly regulated proteolytic cascades. Among these, KLK3 (also known as prostate-specific antigen) is the main executor enzyme responsible for processing of the primary components of semen coagulum, semenogelins I and II.

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The epidermal growth factor receptor (EGFR) plays a central role in cell life by controlling processes such as growth or proliferation. This receptor is commonly overexpressed in a number of epithelial malignancies and its upregulation is often associated with an aggressive phenotype of the tumor. Thus, targeting of EGFR represents a very promising challenge in oncology, and antibodies raised against this receptor have been investigated as potential antitumor agents.

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Human kallikrein 8 (hK8), whose gene was originally cloned as the human ortholog of a mouse brain protease, is known to be associated with diseases such as ovarian cancer and Alzheimer's disease. Recombinant human pro-kallikrein 8 was activated with lysyl endopeptidase-conjugated beads. Amino-terminal sequencing of the activated enzyme demonstrated the cleavage of a 9-aa propeptide from the pro-enzyme.

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The reactive center loop (RCL) of serpins plays an essential role in the inhibition mechanism acting as a substrate for their target proteases. Changes within the RCL sequence modulate the specificity and reactivity of the serpin molecule. Recently, we reported the construction of alpha1-antichymotrypsin (ACT) variants with high specificity towards human kallikrein 2 (hK2) [Cloutier SM, Kündig C, Felber LM, Fattah OM, Chagas JR, Gygi CM, Jichlinski P, Leisinger HJ & Deperthes D (2004) Eur J Biochem271, 607-613] by changing amino acids surrounding the scissile bond of the RCL and obtained specific inhibitors towards hK2.

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Article Synopsis
  • The KLK14 gene is a newly discovered member of the human kallikrein family, which consists of 15 serine protease genes, primarily found in prostate and endocrine tissues, but its exact function remains unclear.
  • Studies indicate that KLK14 expression is elevated in prostate and breast cancer tissues, with higher levels linked to more aggressive tumors.
  • Using phage-display technology, researchers identified specific substrates for KLK14, revealing its dual activity (trypsin- and chymotrypsin-like) and showed it can effectively hydrolyze important extracellular matrix proteins like laminin alpha-5 and collagen IV.
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Although the cellular steps required for metastasis are similar for all cancer cells, proteases involved in this process and their expression levels vary greatly between different cancer types. Thus, the identification of these proteolytic activities represents a crucial issue in the understanding of cancer development. Until now, phage display substrate technology has been successfully employed for the characterization of purified proteases but was never used with a mix of proteases.

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Article Synopsis
  • A protease is an enzyme that breaks down peptide bonds, and characterizing it involves identifying peptide sequences, measuring activity, and determining kinetic parameters.
  • New biological substrates using fluorescent proteins (CFP and YFP) have been created for in vivo detection of protease activity, offering an alternative to traditional chemical substrates for in vitro testing.
  • The study optimizes conditions for producing the CFP-YFP fusion protein in E. coli, finding optimal FRET activity at specific pH, salt concentration, and temperature while demonstrating the system's resistance to nonspecific proteolysis and measuring substrate specificity through kinetic analysis.
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The reactive site loop of serpins undoubtedly defines in part their ability to inhibit a particular enzyme. Exchanges in the reactive loop of serpins might reassign the targets and modify the serpin-protease interaction kinetics. Based on this concept, we have developed a procedure to change the specificity of known serpins.

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  • The study investigates how different forms of Fas ligand (FasL) induce apoptosis (programmed cell death), with membrane-bound FasL triggering the process while the soluble form does not unless cross-linked.
  • Researchers engineered hexameric FasL proteins that showed increased cytotoxicity and successfully induced apoptosis by forming a signaling complex.
  • The research uncovered three critical steps in Fas-mediated apoptosis—receptor binding, activation, and recruitment of signaling molecules—highlighting that FasL's oligomerization is essential for effective signaling.
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Phage display substrate enables rapid determination of protease specificity by exposing vast numbers of recombinant peptides to a given protease. Peptides released through specific cleavage are amplified in an expression system. Phage display substrate has been widely exploited and developed further.

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Human glandular kallikrein 2 (hK2) is a trypsin-like serine protease expressed predominantly in the prostate epithelium. Recently, hK2 has proven to be a useful marker that can be used in combination with prostate specific antigen for screening and diagnosis of prostate cancer. The cleavage by hK2 of certain substrates in the proteolytic cascade suggest that the kallikrein may be involved in prostate cancer development; however, there has been very little other progress toward its biochemical characterization or elucidation of its true physiological role.

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