Prediction of aqueous free energies of solvation using coupled QM and MM explicit solvent simulations.

A method based on molecular dynamics simulations which employ two distinct levels of theory is proposed and tested for the prediction of Gibbs free energies of solvation for non-ionic solutes in water. The method consists of two additive contributions: (i) an evaluation of the free energy of solvation predicted by a computationally efficient molecular mechanics (MM) method; and (ii) an evaluation of the free energy difference between the potential energy surface of the MM method and that of a more computationally intensive first-principles quantum-mechanical (QM) method. The latter is computed by a thermodynamic integration method based on a series of shorter molecular dynamics simulations that employ weighted averages of the QM and MM force evaluations.

Dehalogenation of aromatics by nucleophilic aromatic substitution.

Nucleophilic aromatic substitution has been implicated as a mechanism for both the biotic and abiotic hydrodehalogenation of aromatics. Two mechanisms for the aqueous dehalogenation of aromatics involving nucleophilic aromatic substitution with hydride as a nucleophile are investigated using a validated density functional and continuum solvation protocol. For chlorinated and brominated aromatics, nucleophilic addition ortho to carbon-halogen bonds via an anionic intermediate is predicted to be the preferred mechanism in the majority of cases, while concerted substitution is predicted to be preferred for most fluorinated aromatics.

Quantum chemical and matrix-IR characterization of CH3CN-BCl3: a complex with two distinct minima along the B-N bond potential.

We have characterized the structural and energetic properties of CH3CN-BCl3via computations and matrix-IR spectroscopy. We find two equilibrium structures of the complex via computations. At the MP2/aug-cc-pVTZ level, the global minimum energy structure has a B-N distance of 1.

Thermochemical factors affecting the dehalogenation of aromatics.

Halogenated aromatics are one of the largest chemical classes of environmental contaminants, and dehalogenation remains one of the most important processes by which these compounds are degraded and detoxified. The thermodynamic constraints of aromatic dehalogenation reactions are thus important for understanding the feasibility of such reactions and the redox conditions necessary for promoting them. Accordingly, the thermochemical properties of the (poly)fluoro-, (poly)chloro-, and (poly)bromobenzenes, including standard enthalpies of formation, bond dissociation enthalpies, free energies of reaction, and the redox potentials of Ar-X/Ar-H couples, were investigated using a validated density functional protocol combined with continuum solvation calculations when appropriate.

Structure, bonding, and energetic properties of nitrile-borane complexes: RCN-BH3.

The structural and energetic properties of CH(3)CN-BH(3), HCN-BH(3), FCH(2)CN-BH(3), and F(3)CCN-BH(3) have been examined via density functional theory and post-Hartree-Fock calculations. The B-N distances in these systems are notably short, less than 1.6 Å, and the binding energies are substantial, about 20 kcal/mol.

A short yet very weak dative bond: structure, bonding, and energetic properties of N(2)-BH(3).

The structure, bonding, and energetic properties of the N(2)-BH(3) complex are reported as characterized by density functional theory (DFT) and post-Hartree-Fock (HF) calculations. The equilibrium structure of the complex exhibits a short B-N distance near 1.6 A, comparable to that of a strong acid-base complex like H(3)N-BH(3).