Publications by authors named "Daniel Nickrent"

Article Synopsis
  • The study investigates how haustorial parasitism affects the plastid genome, particularly within the Santalales order, by comparing non-parasitic and hemiparasitic plant families to understand the transition to a parasitic lifestyle.
  • Researchers sequenced and analyzed new samples' plastomes and nuclear ribosomal genes to explore phylogenetic relationships and evolution patterns in plastid genes.
  • Findings revealed significant genetic changes, including a complete loss of certain plastid genes in confirmed parasites, suggesting a link between plastome evolution and the shift toward parasitism.
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Wiens & Hawksw. is a rare Azorean endemic epiphytic hemiparasite (mistletoe), which typically parasitizes branches of the gymnosperm (Hochst. ex Seub.

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Article Synopsis
  • Plant diversity is crucial for ecosystems, biogeochemical cycles, and human welfare, but knowledge about its global distribution is incomplete, impacting research and conservation efforts.
  • The study utilized machine learning and statistical methods on 830 regional plant inventories to address hypotheses about vascular plant diversity, achieving high explanatory power for species richness (up to 80.9%) and phylogenetic richness (up to 83.3%).
  • Current climate and environmental heterogeneity were identified as primary drivers of plant diversity, and the research produced predictive maps that accurately estimate global plant diversity, aiding conservation and macroecology decisions.
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Several molecular phylogenetic studies of the mistletoe family Loranthaceae have been published such that now the general pattern of relationships among the genera and their biogeographic histories are understood. Less is known about species relationships in the larger (> 10 species) genera. This study examines the taxonomically difficult genus Taxillus composed of 35-40 Asian species.

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A new holomycoheterotrophic member of Burmanniaceae, , is described from Mt. Hamiguitan located on the island of Mindanao, Philippines. This species differs from the recently named from Cebu in a number of quantitative and qualitative characters.

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Rafflesia (Rafflesiaceae) is a small endo-holoparasitic Asian plant genus known for its exceptionally large flowers, rare species, and high island endemism. In this study, phylogenetic (parsimony and Bayesian inference) and biogeographic (BioGeoBEARS) analyses of DNA sequence data (atp6 and matR genes, and nad1 B-C intron from the mitochondrial genome, and the nuclear ribosomal internal transcribed spacer) were used to reconstruct the phylogenetic relationships among 12 of the 13 known Philippine Rafflesia species and to determine the timing and pathways of their diversification. The results of these analyses confirm those of previous Rafflesia studies (which were largely focused on non-Philippine species) in finding pronounced biogeographic patterns.

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Premise Of The Study: The sandalwood order (Santalales) includes members that present a diverse array of inflorescence types, some of which are unique among angiosperms. This diversity presents not only interpretational challenges but also opportunities to test fundamental concepts in plant morphology. Here we used modern phylogenetic approaches to address the evolution of inflorescences in the sandalwood order.

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Besides their alleged therapeutic effects, mistletoes of the genus Viscum L. (Viscaceae) are keystone species in many ecosystems across Europe, Africa, Asia and Australia because of their complex faunal interactions. We here reconstructed the evolutionary history of Viscum based on plastid and nuclear DNA sequence data.

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This dataset provides the Global Naturalized Alien Flora (GloNAF) database, version 1.2. GloNAF represents a data compendium on the occurrence and identity of naturalized alien vascular plant taxa across geographic regions (e.

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Coadaptation between mistletoes and birds captured the attention of Charles Darwin over 150 years ago, stimulating considerable scientific research. Here we used Loranthaceae, a speciose and ecologically important mistletoe family, to obtain new insights into the interrelationships among its hosts and dispersers. Phylogenetic analyses of Loranthaceae were based on a dataset of nuclear and chloroplast DNA sequences.

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All around the globe, humans have greatly altered the abiotic and biotic environment with ever-increasing speed. One defining feature of the Anthropocene epoch is the erosion of biogeographical barriers by human-mediated dispersal of species into new regions, where they can naturalize and cause ecological, economic and social damage. So far, no comprehensive analysis of the global accumulation and exchange of alien plant species between continents has been performed, primarily because of a lack of data.

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Rafflesia is a genus of holoparasitic plants endemic to Southeast Asia that has lost the ability to undertake photosynthesis. With short-read sequencing technology, we assembled a draft sequence of the mitochondrial genome of Rafflesia lagascae Blanco, a species endemic to the Philippine island of Luzon, with ∼350× sequencing depth coverage. Using multiple approaches, however, we were only able to identify small fragments of plastid sequences at low coverage depth (<2×) and could not recover any substantial portion of a chloroplast genome.

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Santalales comprise mainly parasitic plants including mistletoes and sandalwoods. Bitegmic ovules similar to those found in most other angiosperms are seen in many members of the order, but other members exhibit evolutionary reductions to the unitegmic and ategmic conditions. In some mistletoes, extreme reduction has resulted in the absence of emergent ovules such that embryo sacs appear to remain embedded in placental tissues.

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The mistletoe Tristerix corymbosus (Loranthaceae) is present in the temperate forest and Chilean matorral biomes of Chile and northwest Patagonia. The closely related cactus-specific species, T. aphyllus, occurs only in the matorral biome.

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Extreme modification and reduction in floral morphology presents an obstacle to determining the evolutionary relationships and homologies of the holoparasites in Balanophoraceae. Developing flowers and inflorescences of two dioecious species, Balanophora papuana and B. elongata, were compared to each other and to the monoecious B.

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Chloroplast sequences spanning rps7 to 23S rDNA in Arceuthobium campylopodum and A. pendens were generated and compared to Arabidopsis and seven other parasitic plants. Pseudogenes for trnV, trnI (GAU), and trnA (UGC) were seen in both Arceuthobium species, paralleling the situation in the holoparasite Epifagus (Orobanchaceae).

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Article Synopsis
  • Loranthaceae is a diverse family of mostly aerial hemiparasitic plants with around 900 species and 73 genera, found mainly in tropical regions but also in temperate areas.
  • The family is divided into three tribes based on genetic and morphological characteristics, with specific chromosome numbers helping to categorize subtribes.
  • Phylogenetic analysis using gene sequences indicates that the family can be grouped into three major clades, with some South American genera being somewhat ambiguously classified in different subtribes.
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Past molecular phylogenetic work has shown that aerial parasites have evolved five times independently in the sandalwood order (Santalales), but the absolute timing of these diversifications was not addressed. DNA sequences from nuclear SSU and LSU rDNA, and chloroplast rbcL, matK and trnL-F from 39 santalalean taxa were obtained. Separate and combined data partitions were analyzed with maximum parsimony and Bayesian inference.

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Article Synopsis
  • This study explores the relationships between species in the Tristerix genus, emphasizing the impact of ecological factors on speciation.
  • The researchers used molecular phylogenetic analysis, confirming a classification that divides Tristerix into northern and southern clades and showing strong support for certain species within these groups.
  • Speciation in Tristerix appears linked to the development of unique biomes in the Andes and interactions with pollinators and seed dispersers, illustrating the complexity of ecological influences on evolution.
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Species of Rafflesiaceae possess the world's largest flowers (up to 1 meter in diameter), yet their precise evolutionary relationships have been elusive, hindering our understanding of the evolution of their extraordinary reproductive morphology. We present results of phylogenetic analyses of mitochondrial, nuclear, and plastid data showing that Rafflesiaceae are derived from within Euphorbiaceae, the spurge family. Most euphorbs produce minute flowers, suggesting that the enormous flowers of Rafflesiaceae evolved from ancestors with tiny flowers.

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Article Synopsis
  • Recent studies have clarified the relationships among holoparasitic plants, particularly the families Balanophoraceae and Cynomoriaceae, revealing that they do not share a close genetic relationship.
  • Molecular analyses indicate that Cynomorium, a known parasitic plant, is more closely related to the Saxifragales order, while Balanophoraceae is linked to Santalales.
  • The study raises conservation concerns due to the increasing collection of wild Cynomorium for herbal use and calls for further research to identify its related photosynthetic species for potential cultivation.
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Article Synopsis
  • Recent studies using DNA analysis have placed holoparasitic plants like Rafflesia, Rhizanthes, and Sapria in the angiosperm order Malpighiales, while Mitrastema belongs to Ericales, revealing complex phylogenetic relationships among these species.
  • The investigation indicates that Cytinaceae consistently aligns with Malvales across various analyses, while the relationships of Apodanthaceae fluctuate depending on the gene data used, suggesting possible horizontal gene transfer (HGT) may be influencing these patterns.
  • The findings confirm that Rafflesiales is not a single lineage but encompasses multiple independent families, highlighting the importance of utilizing advanced analytical methods for accurate phylogenetic reconstruction.
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Ribosomal genes are considered to have a high degree of sequence conservation between species and also at higher taxonomic levels. In this paper we document a case where a single individual of Cynomorium coccineum (Cynomoriaceae), a nonphotosynthetic holoparasitic plant, contains highly divergent plastid ribosomal genes. PCR amplification a nearly complete ribosomal DNA cistron was performed using genomic DNA, the products cloned, and the 23S rDNA genes were sequenced from 19 colonies.

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