Publications by authors named "Daniel Li"

Objective: To assess refractive and visual outcomes of a spherical Implantable Collamer Lens (ICL) followed by planned postoperative adjunctive laser-assisted in situ keratomileusis (LASIK) in the treatment of high compound hyperopic astigmatism.

Methods: In this prospective, multi-center, multi-surgeon, single-arm trial, eyes with ≥ 3.50 D hyperopia and ≥ 2.

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Article Synopsis
  • The study connects genetic variants linked to coronary artery disease (CAD) with cellular and molecular traits by analyzing chromatin accessibility and gene expression in human coronary arteries.
  • Through single-cell analysis, researchers identified thousands of specific chromatin accessibility loci (caQTLs) and found that smooth muscle cells (SMCs) are particularly susceptible to genetic risks associated with CAD.
  • They developed a comprehensive mapping approach to trace disease variants to potential causal genes across different cell types and confirmed their findings using advanced techniques like genome-wide Hi-C and CRISPR interference.
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Introduction: Environmental exposure to dioxin has been linked to increased myocardial infarction. Smooth muscle cells (SMC) in the coronary vasculature play a critical role in atherosclerotic plaque remodeling due to their phenotypic plasticity, however, the detailed mechanism linking dioxin exposure to adverse SMC modulation is not well understood.

Methods: Single-cell RNA and ATAC sequencing and histological analyses were performed on the aorta from mouse models of atherosclerosis exposed to 2,3,7,8-Tetrachlorodibenzo-p-dioxin (TCDD) or control.

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Evasion of apoptosis promotes tumor survival and contributes to resistance to cancer therapeutics in head and neck squamous cell carcinoma (HNSCC). Our recent work has demonstrated that HNSCC's highly express pro-survival anti-apoptotic proteins Bcl-xL and Mcl-1. Nevertheless, the mechanism of HNSCC to evade apoptosis is still not well understood.

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  • MBW Xe-MRI measures gas washout and ventilation in pediatric cystic fibrosis (CF) patients and its effectiveness in monitoring changes after initiating therapy with elexacaftor/tezacaftor/ivacaftor (ETI) has been evaluated.
  • 12 participants underwent MBW Xe-MRI and pulmonary function tests at baseline and one month after starting ETI therapy, showing significant improvements in ventilation metrics.
  • Findings indicated that MBW Xe-MRI-derived measures like fractional ventilation and coefficient of variation can effectively assess lung function changes, making it a useful tool alongside traditional pulmonary function tests in pediatric CF care.
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Large-scale Randomised Controlled Trials (RCTs) are widely regarded as "the gold standard" for testing the causal effects of school-based interventions. RCTs typically present the statistical significance of the average treatment effect (ATE), which captures the effect an intervention has had on average for a given population. However, key decisions in child health and education are often about individuals who may be very different from those averages.

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Background: Dilated cardiomyopathy (DCM) involves myocardial remodeling, characterized by significant fibrosis and extracellular matrix expansion. These changes impair heart function, increasing the risk of heart failure and sudden cardiac death. This study investigates the prognostic value of circulating fibrosis biomarkers as a less invasive method in DCM patients.

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Vascular beds show different propensities for different vascular pathologies, yet mechanisms explaining these fundamental differences remain unknown. We sought to build a transcriptomic, cellular, and spatial atlas of human arterial cells across multiple different arterial segments to understand this phenomenon. We found significant cell type-specific segmental heterogeneity.

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Article Synopsis
  • The study aimed to compare a new MRI technique (3D UTE PREFUL) for measuring lung ventilation to existing methods (Xe-MRI and 2D multi-slice PREFUL MRI) in children with cystic fibrosis.
  • Twelve pediatric CF patients underwent various MRI scans to create regional ventilation maps, and multiple statistical methods were used to compare the ventilation defect percentages (VDP) derived from these scans.
  • Results indicated that the 3D UTE PREFUL MRI correlated well with the other methods in measuring global lung VDP, suggesting it could be a more sensitive and accessible option for assessing lung ventilation in pediatric CF patients.
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Unlabelled: Mapping the genomic architecture of complex disease has been predicated on the understanding that genetic variants influence disease risk through modifying gene expression. However, recent discoveries have revealed that a significant burden of disease heritability in common autoinflammatory disorders and coronary artery disease is mediated through genetic variation modifying post-transcriptional modification of RNA through adenosine-to-inosine (A-to-I) RNA editing. This common RNA modification is catalyzed by ADAR enzymes, where ADAR1 edits specific immunogenic double stranded RNA (dsRNA) to prevent activation of the double strand RNA (dsRNA) sensor MDA5 ( ) and stimulation of an interferon stimulated gene (ISG) response.

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Cancer cells show altered antioxidant defense systems, dysregulated redox signaling, and increased generation of reactive oxygen species (ROS). Targeting cancer cells through ROS-mediated mechanisms has emerged as a significant therapeutic strategy due to its implications in cancer progression, survival, and resistance. Extensive research has focused on selective generation of HO in cancer cells for selective cancer cell killing by employing various strategies such as metal-based prodrugs, photodynamic therapy, enzyme-based systems, nano-particle mediated approaches, chemical modulators, and combination therapies.

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Objective: Cardiovascular disease (CVD) risk is increased in SLE and underestimated by general population prediction algorithms. We aimed to develop a novel SLE-specific prediction tool, SLECRISK, to provide a more accurate estimate of CVD risk in SLE.

Methods: We studied patients in the Brigham and Women's Hospital SLE cohort.

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The U.S. Food and Drug Administration (FDA) has launched Project Optimus to shift dose selection from the maximum tolerated dose (MTD) to the dose that produces the optimal risk-benefit tradeoff.

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Chimeric antigen receptor (CAR) T-cell therapy is a human gene therapy product where T cells from a patient are genetically modified to enable them to recognize desired target antigen(s) more effectively. In recent years, promising antitumor activity has been seen with autologous CAR T cells. Since 2017, six CAR T-cell therapies for the treatment of hematological malignancies have been approved by the Food and Drug Administration (FDA).

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Printed porous titanium metaphyseal cones have become a mainstay for managing bone loss in revision total knee arthroplasty (rTKA). A short or long stem is routinely used when implanting a cone to augment fixation and offload stresses. This retrospective analysis compared the short-term survivorships and functional outcomes for use of a short or long stem with a metaphyseal cone.

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Background And Purpose: Balloon test occlusion (BTO) evaluates cerebral ischemic tolerance before internal carotid artery (ICA) sacrifice but carries risks like dissection and thrombosis. This study introduces a new approach using a patient-specific circle of Willis (COW) blood flow model, based on non-invasive quantitative MR angiography (qMRA) measurements, to predict the outcomes of BTO.

Methods: We developed individualized COW blood flow models for 43 patients undergoing BTO.

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This paper focuses on the use of novel technologies and innovative trial designs to accelerate evidence generation and increase pharmaceutical Research and Development (R&D) productivity, at Bristol Myers Squibb. We summarize learnings with case examples, on how we prepared and continuously evolved to address the increasing cost, complexities, and external pressures in drug development, to bring innovative medicines to patients much faster. These learnings were based on review of internal efforts toward accelerating R&D focusing on four key areas: adopting innovative trial designs, optimizing trial designs, leveraging external control data, and implementing novel methods using artificial intelligence and machine learning.

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Objective: To establish and characterize a diverse library of head and neck squamous cell cancer (HNSCC) cultures using conditional reprogramming (CR).

Methods: Patients enrolled on an IRB-approved protocol to generate tumor cell cultures using CR methods. Tumor and blood samples were collected and clinical information was recorded.

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Article Synopsis
  • - This review discusses how genome-wide association studies (GWAS) are used to find the underlying causes of vascular disease risk by identifying specific genes and their functions.
  • - It explains the history and methods of GWAS, including the use of data imputation and collaborative meta-analyses to enhance research power and consistency in findings.
  • - The conclusions highlight that GWAS is transforming cardiovascular disease research, leading to better understanding of genetic factors and potential pathways for developing targeted therapies.
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  • - Tracheostomies have a high risk of complications, and effective management relies on well-functioning teams, yet many healthcare providers lack the necessary knowledge and resources for safe care.
  • - A study conducted simulations of tracheostomy emergencies over nearly a year, revealing common human errors and latent safety threats (LSTs) related to communication, equipment, and infection control, with only half of teams successfully completing tasks in the time limit.
  • - The findings highlighted significant knowledge gaps among providers, with a low median quiz score of 46%, suggesting the need for targeted training and interventions to improve tracheostomy care and safety.
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