Publications by authors named "Daniel Crooks"

Hereditary Leiomyomatosis and Renal Cell Cancer (HLRCC) is an inherited cancer syndrome caused by germline pathogenic variants in the fumarate hydratase (FH) gene. Affected individuals are at risk for developing cutaneous and uterine leiomyomas and aggressive FH-deficient renal cell carcinoma (RCC) with a papillary histology. Due to a disrupted TCA cycle, FH-deficient kidney cancers rely on aerobic glycolysis for energy production, potentially creating compensatory metabolic vulnerabilities.

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Article Synopsis
  • A rare case of metastatic renal oncocytoma was thoroughly analyzed using advanced molecular characterization techniques to understand its specific genetic and molecular profile.
  • The study highlighted the challenges in treating this uncommon cancer, as traditional therapies may not be effective.
  • Effective targeted therapy strategies were explored, showing promising results for managing the disease and improving patient outcomes.
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Hypoxic tumor microenvironments pose a significant challenge in cancer treatment. Hypoxia-activated prodrugs like evofosfamide aim to specifically target and eliminate these resistant cells. However, their effectiveness is often limited by reoxygenation after cell death.

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Metabolic reprogramming is a hallmark of cancer that facilitates changes in many adaptive biological processes. Mutations in the tricarboxylic acid cycle enzyme fumarate hydratase (FH) lead to fumarate accumulation and cause hereditary leiomyomatosis and renal cell cancer (HLRCC). HLRCC is a rare, inherited disease characterized by the development of non-cancerous smooth muscle tumors of the uterus and skin, and an increased risk of an aggressive form of kidney cancer.

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  • * Researchers conducted studies on patients with HLRCC symptoms but without known FH mutations, finding significant reductions in FH enzyme activity and protein levels, despite normal gene expression.
  • * Analysis revealed a specific intronic variant in the FH gene that leads to altered mRNA splicing and a shortened protein, underscoring the importance of comprehensive genetic testing to identify non-coding pathogenic variants.
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  • The study aimed to identify the clinical features and genetic basis of a familial cancer syndrome linked to lipomas, fibrofolliculomas, and kidney cancer in affected patients.
  • Genomic analysis revealed a pathogenic variant in the PRDM10 gene, which is associated with a severe form of bilateral, multifocal papillary renal cell carcinoma and affects the expression of other related genes.
  • The findings suggest those with specific skin manifestations and subcutaneous lipomas should be tested for PRDM10 variants, and kidney tumors in these individuals should be treated with surgical removal rather than merely monitored.
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  • MiT-Renal Cell Carcinoma (RCC) is an aggressive cancer subtype affecting mainly young people, characterized by TFE3, TFEB, or MITF gene translocations, which complicates diagnosis and lacks standard treatment options.
  • Research involved characterizing TFE3-RCC cell lines through immunohistochemistry (IHC) and gene expression, followed by a drug screen identifying several promising therapeutic agents, particularly targeting the PI3K/mTOR pathway and using Mithramycin A.
  • Preclinical studies showed that drugs like NVP-BGT226, Mithramycin A, and the antibody-drug conjugate CDX-011 could be effective therapies for advanced MiT-RCC, either alone or
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is the most commonly mutated gene in cancer, and gain-of-function mutations have wide-ranging effects. Efforts to reactivate wild-type p53 function and inhibit mutant functions have been complicated by the variety of mutations. Identified from a screen, the NSC59984 compound has been shown to restore activity to mutant p53 in colorectal cancer cells.

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Biologically important 2-hydroxy carboxylates such as lactate, malate, and 2-hydroxyglutarate exist in two enantiomeric forms that cannot be distinguished under achiral conditions. The D and L (or R, S) enantiomers have different biological origins and functions, and therefore, there is a need for a simple method for resolving, identifying, and quantifying these enantiomers. We have adapted and improved a chiral derivatization technique for nuclear magnetic resonance (NMR), which needs no chromatography for enantiomer resolution, with greater than 90% overall recovery.

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Drastic sensitivity enhancement of dynamic nuclear polarization is becoming an increasingly critical methodology to monitor real-time metabolic and physiological information in chemistry, biochemistry, and biomedicine. However, the limited number of available hyperpolarized C probes, which can effectively interrogate crucial metabolic activities, remains one of the major bottlenecks in this growing field. Here, we demonstrate [1-C] N-acetyl cysteine (NAC) as a novel probe for hyperpolarized C MRI to monitor glutathione redox chemistry, which plays a central part of metabolic chemistry and strongly influences various therapies.

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Lipids comprise diverse classes of compounds that are important for the structure and properties of membranes, as high-energy fuel sources and as signaling molecules. Therefore, the turnover rates of these varied classes of lipids are fundamental to cellular function. However, their enormous chemical diversity and dynamic range in cells makes detailed analysis very complex.

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  • Understanding the Warburg shift to aerobic glycolysis is crucial for grasping the metabolic aspects of cancer, particularly in HLRCC, an aggressive cancer tied to inactivation of the fumarate hydratase gene.
  • HLRCC tumors display mitochondrial respiratory chain dysfunction, linked to reduced mitochondrial DNA content and increased mutations, which impacts essential subunits needed for energy production.
  • The accumulation of fumarate in these tumors disrupts mtDNA replication and proofreading, fostering the transition to aerobic glycolysis and accelerating cancer progression.
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Renal cell carcinoma (RCC) is a heterogenous disease composed of several different cancer types characterized by distinct histologies and genetic alterations, including mutation of the Krebs cycle enzyme genes for fumarate hydratase and succinate dehydrogenase (SDH). This report describes a patient with multifocal renal tumors that presented with a novel, biphasic histologic morphology with one component consisting of small cells growing in a diffuse pattern occasionally forming glandular and cystic structures, reminiscent of type 1 papillary RCC, and the other component having larger cells with abundant eosinophilic and clear cytoplasm and appearing in a solid pattern of growth. Genetic analysis of multiple tumors showed that all had a somatic mutation of the IDH2 gene that created the known pathogenic, gain-of-function p.

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  • HLRCC is a genetic cancer syndrome linked to mutations in the fumarate hydratase enzyme, leading to the accumulation of fumarate, which can alter gene activity and promote tumor formation.
  • A chemoproteomic analysis of kidney-derived HLRCC cell lines revealed a significant change in cysteine reactivity when fumarate levels were reduced by reintroducing functional FH, indicating both transcriptional and posttranslational mechanisms at play.
  • The study identified new targets and pathways affected by FH mutations and emphasized the diversity of protein responses in different HLRCC models, suggesting the need for further exploration of tissue-specific adaptations for potential cancer therapies.
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Background: The loss-of-function mutation of fumarate hydratase (FH) is a driver of hereditary leiomyomatosis and renal cell carcinoma (HLRCC). Fumarate accumulation results in activation of stress-related mechanisms leading to upregulation of cell survival-related genes. To better understand how cells compensate for the loss of FH in HLRCC, we determined the amino acid nutrient requirements of the FH-deficient UOK262 cell line (UOK262) and its FH-repleted control (UOK262WT).

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Oligodendrocytes are the myelinating cells of the central nervous system (CNS) that are generated from oligodendrocyte progenitor cells (OPC). OPC are distributed throughout the CNS and represent a pool of migratory and proliferative adult progenitor cells that can differentiate into oligodendrocytes. The central function of oligodendrocytes is to generate myelin, which is an extended membrane from the cell that wraps tightly around axons.

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  • Metabolic variations within and among tumors significantly influence cancer treatment outcomes, but non-invasive methods to assess these differences are limited.
  • The study focuses on pancreatic ductal adenocarcinoma, showing that tumors with the same genetic makeup can be differentiated by their rates of 13C labeled glucose metabolism using advanced imaging techniques.
  • This imaging approach reveals unique metabolic profiles and regions of lactate production in tumors, highlighting tumor heterogeneity that conventional methods like FDG-PET may fail to detect.
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Giant cell arteritis is the most common primary systemic vasculitis in adults aged ≥50 years and peaks in the eighth decade of life. Common symptoms include headache, scalp tenderness and jaw claudication. Elevated acute phase reactants (erythrocyte sedimentation rate and C-reactive protein) are present in >90% of patients.

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Kidney cancer is not a single disease but represents several distinct types of cancer that have defining histologies and genetic alterations and that follow different clinical courses and have different responses to therapy. Mutation of genes associated with kidney cancer, such as or , dysregulates the tumor's responses to changes in oxygen, iron, nutrient, or energy levels. The identification of these varying genetic bases of kidney cancer has increased our understanding of the biology of this cancer, allowing the development of targeted therapies and the appreciation that it is a cancer driven by metabolic alterations.

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Bladder cancer (BC) is heterogeneous and expresses various cell surface targets. Photoimmunotherapy (PIT) involves monoclonal antibodies (MAbs) conjugated to a photoabsorber (PA), IR Dye 700Dx, and then activated by near infra-red light (NIR) to specifically target tumors. We have demonstrated that tumors expressing EGFR can be targeted with PIT.

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  • Stable isotope-resolved metabolomics (SIRM) techniques are gaining popularity among cancer researchers for analyzing metabolic pathways and finding weaknesses in cancer cells.
  • The chapter highlights that while analytical methods are improving, there is often inconsistency in tissue culture and sample extraction processes, which are not well-documented.
  • It outlines essential tissue culture practices and offers a comprehensive procedure for metabolic labeling and metabolite extraction to enhance data collection from tracer experiments.
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Hereditary cancer disorders often provide an important window into novel mechanisms supporting tumor growth. Understanding these mechanisms thus represents a vital goal. Toward this goal, here we report a chemoproteomic map of fumarate, a covalent oncometabolite whose accumulation marks the genetic cancer syndrome hereditary leiomyomatosis and renal cell carcinoma (HLRCC).

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Dysregulated metabolism can fuel cancer by altering the production of bioenergetic building blocks and directly stimulating oncogenic gene-expression programs. However, relatively few optical methods for the direct study of metabolites in cells exist. To address this need and facilitate new approaches to cancer treatment and diagnosis, herein we report an optimized chemical approach to detect the oncometabolite fumarate.

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Objective: Several small case series identified KCTD7 mutations in patients with a rare autosomal recessive disorder designated progressive myoclonic epilepsy (EPM3) and neuronal ceroid lipofuscinosis (CLN14). Despite the name KCTD (potassium channel tetramerization domain), KCTD protein family members lack predicted channel domains. We sought to translate insight gained from yeast studies to uncover disease mechanisms associated with deficiencies in KCTD7 of unknown function.

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