Publications by authors named "Daniel Alejandro Fernandez-Velasco"

We report the characterization of the three-dimensional structure of the CEMP1-p1 peptide [MGTSSTDSQQAQHRRCSTSN: corresponding to residues 1-20 of the N-terminus of cementum protein 1 (CEMP1)]. This peptide imitates the capacity of CEMP1 to stimulate hydroxyapatite (HA) crystal nucleation and growth, and promotes the differentiation of periodontal ligament cells into a cementoblastic phenotype. Additionally, in experimental models of critical-sized calvarial defects in Wistar rats, CEMP1-p1 has shown osteogenic properties that enhanced the physiological deposition and maturation of newly formed bone.

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Article Synopsis
  • Understanding binding thermodynamics is important for studying how molecular complexes gain affinity and selectivity, particularly in periplasmic binding proteins (PBPs), which are used in biosensor design.
  • The lysine-arginine-ornithine binding protein (LAO) has a significant difference in affinity for l-arginine and l-histidine, attributed to various protein-ligand contacts and enthalpic factors.
  • Structural analysis through alanine scanning, isothermal titration calorimetry, and X-ray crystallography reveals that multiple residues influence selectivity and affinity, while solvent effects also play a crucial role in binding thermodynamics.
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GPN-loop GTPases 1 and 3 are required for RNA polymerase II (RNAPII) nuclear import. Gpn1 and Gpn3 display some sequence similarity, physically associate, and their protein expression levels are mutually dependent in human cells. We performed here Fluorescence Resonance Energy Transfer (FRET), molecular modeling, and cell biology experiments to understand, and eventually disrupt, human Gpn1-Gpn3 interaction in live HEK293-AD cells.

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Function, structure, and stability are strongly coupled in obligated oligomers, such as triosephosphate isomerase (TIM). However, little is known about how this coupling evolved. To address this question, five ancestral TIMs (ancTIMs) in the opisthokont lineage were inferred.

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