Publications by authors named "Dan-Feng Lu"

Incomplete immune reconstitution happens in some HIV-infected patients who have achieved persistent viral suppression under antiretroviral therapy (ART). We performed single-cell RNA sequencing for peripheral blood mononuclear cells to analyze B cell receptor (BCR) repertoire and B cell subtypes in health controls (non-HIV-infected, HCs), HIV-infected immunological responders (IRs), and immunological nonresponders (INRs). We found that the dominant usage of gene segments of naïve B cells and memory B cells were and , and the diversity of BCR repertoire was decreased in INRs.

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Epimedium brevicornum Maxim has a long history of use in the treatment of estrogen deficiency-related diseases. However, the chemical constituents and mechanism of action of this medicinal plant are not fully understood. In the present study, we isolated four new isoprenylated flavonoid glycosides, as well as 16 known flavonoids (13 isoprenylated flavonoids), from this plant.

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A wavelength-interrogated surface plasmon resonance (SPR) sensor based on a nanoporous gold (NPG) film has been fabricated for the sensitive detection of trace quantities of benzo[a]pyrene (BaP) in water. The large-area uniform NPG film was prepared by a two-step process that includes sputtering deposition of a 60-nm-thick AuAg alloy film on a glass substrate and chemical dealloying of the alloy film in nitric acid. For SPR sensor applications, the NPG film plays the dual roles of analyte enrichment and supporting surface plasmon waves, which leads to sensitivity enhancement.

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In a recent report we demonstrated a miniature static Fourier transform spectrometer (FTS) that was implemented with a LiNbO (LN) waveguide electro-optic modulator (EOM) combined with the dispersion relation between its half-wave voltage and wavelength. The FTS was verified to be able to measure laser wavelength and for low-resolution spectroscopy. In this report, we successfully applied the resolution enhancement algorithm to the FTS, resulting in at least a three-fold increase in its spectral resolution without causing obvious distortion of the measured spectra.

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An optical fiber optofluidic biosensor for the detection of DNA hybridization and methylation has been proposed and experimentally demonstrated. An in-line fiber Michelson interferometer was formed in the photonic crystal fiber. A micrhole in the collapsed region, which combined the tunable mode coupler and optofluidic channel, was fabricated by using femtosecond laser micromachining.

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A prototype stationary Fourier transform spectrometer (FTS) was constructed with a fiber-coupled lithium niobate (LiNbO3) waveguide Mach-Zehnder interferometer (MZI) for the purpose of rapid on-site spectroscopy of biological and chemical measurands. The MZI contains push-pull electrodes for electro-optic modulation, and its interferogram as a plot of intensity against voltage was obtained by scanning the modulating voltage from -60 to +60 V in 50 ms. The power spectrum of input signal was retrieved by Fourier transform processing of the interferogram combined with the wavelength dispersion of half-wave voltage determined for the MZI used.

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Herpes simplex virus type 1 (HSV-1) enters productive infection after infecting epithelial cells, where it controls the host nucleus to make viral proteins, starts viral DNA synthesis and assembles infectious virions. In this process, replicating viral genomes are organized into replication centers to facilitate viral growth. HSV-1 is known to use host factors, including host chromatin and host transcription regulators, to transcribe its genes; however, the invading virus also encounters host defense and stress responses to inhibit viral growth.

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Spectral surface plasmon resonance (SPR) sensor with a time-resolved charge-coupled device (CCD) detector is a powerful analytical tool for label-free detection of biomolecular interaction at the liquid/solid interface and for in situ study of molecular adsorption behavior. In this work, the layer-by-layer self-assembly processes for three nanocomposite films were monitored in real time using a broadband spectral SPR sensor with a large dynamic range. Kinetics studies suggest that cytochrome c (Cyt c) and deoxy ribonucleic acid (DNA) adsorptions obey the Langmuir-isotherm theory, while gold nanoparticle (GNP) adsorption follows the Diffusion-controlled model.

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Kretschmann-type waveguide structures, including Plasmon Waveguide (PW) and Resonant Mirror (RM), have been applied in interfacial Raman spectroscopy due to the following unique features: (1) unlike the classic surface enhanced Raman scattering (SERS) substrates made of either gold or silver, both PW and RM can be prepared using a large variety of inexpensive materials; (2) the field enhancement factors using these structures can be theoretically predicted and experimentally controlled, which enables us to manipulate the surface Raman sensitivity with high repeatability; (3) the use of transverse electric (TE) and transverse magnetic (TM) modes for Raman excitation allows us to evaluate the orientation of target molecules immobilized on the waveguide surface; (4) the unwanted impact of noble metals on the Raman fingerprints of target molecules, which is often observed for conventional SERS substrates, can be avoided upon the use of dielectric waveguides. In this paper, guided-mode-coupled directional Raman emission, which is an additional important feature of the waveguide Raman technique, was theoretically investigated based on the optical reciprocity theorem combined with the Fresnel equations. The simulation results indicate that the directional Raman emission from a dipole located within the field confinement and penetration depth of a guided mode depends on both the orientation of the dipole and its distance from the waveguide surface.

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A simple and reliable spectrum-retrieval method was proposed for the development of miniature stationary Fourier transform (FT) spectrometers based on a LiNbO₃ (LN) waveguide Mach-Zehnder interferometer (MZI) modulator. The method takes into account the wavelength dependence of the optical pathlength difference (OPD) and allows us to use a nonlinear voltage ramp to modulate the OPD. The method is based on the dispersion of the half-wave voltage, which was measured to be a monotonous polynomial function of the wavelength for the LN waveguide MZI used.

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Sol-gel copolymer-templated mesoporous silica films with a thickness of 70 nm and interpore spacing of 4.34 nm were fabricated on gold layer covered glass substrates for application as a wavelength-interrogated surface plasmon resonance (SPR) sensor. The resonance wavelength (λ(R)) of the sensor with a solution sample was determined by absorptiometry at a given incident angle.

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Inhibition of aromatase, the key enzyme in estrogen biosynthesis, is an important strategy in the treatment of breast cancer. Several dietary flavonoids show aromatase inhibitory activity, but their tissue specificity and mechanism remain unclear. This study found that the dietary flavonoid luteolin potently inhibited estrogen biosynthesis in a dose- and time-dependent manner in KGN cells derived from human ovarian granulosa cells, the major source of estrogens in premenopausal women.

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A new steroid, vernoanthelsterone A (1), and five known steroids were isolated from the aerial parts of Vernonia anthelmintica Willd. Compound 1 possesses a Δ(8(14))-15-one moiety. To our best knowledge, few steroids with this moiety have been reported before.

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The competitive adsorption of methylene blue (MB) and β-casein on hydrophilic glass from an aqueous mixed solution was directly detected at the solution pH smaller than the protein isoelectric point (pI) by means of the waveguide-based broadband time-resolved evanescent wave absorption spectroscopy. The competitive adsorption causes the MB coverage to exponentially decrease with time from its peak value and prevents MB aggregation at the interface. The kinetic equation for the competitive adsorption of binary adsorbates was theoretically deduced based on the Langmuir model, and was used for creating the best fit to the experimental data.

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Deposition of a tapered thin film of Ta(2)O(5) onto a single-mode, polarization-insensitive slab glass waveguide enables the resultant structure to serve as a simple, inexpensive yet highly sensitive polarimetric interferometer for trace, even ultra-trace, detection of chemical and biochemical analytes. By comparing the measured refractive-index sensitivity with that simulated based on a four-layer homogeneous waveguide, the equivalent thickness for the tapered layer of Ta(2)O(5) and the sensitivity of the sensor to adlayer thickness were determined. Responses of the sensor to unspecific adsorption of bovine serum albumin (BSA) and to surface antibody-antigen interaction were investigated in situ and the corresponding surface coverages were obtained with the adlayer-thickness sensitivity.

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