Publications by authors named "Dan J"

Prompt learning is a powerful technique that enables the transfer of Vision-Language Models (VLMs) like CLIP to downstream tasks. However, when the prompt-based methods are fine-tuned solely on base classes, they often struggle to generalize to novel classes lacking visual samples during training, especially in scenarios with limited training data. To address this challenge, we propose an innovative approach called Synth-CLIP that leverages synthetic data to enhance CLIP's generalization capability for base classes and the general capability for novel classes.

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Zygotic genome activation occurs in two-cell (2C) embryos, and a 2C-like state is also activated in sporadic (~1%) naïve embryonic stem cells in mice. Elevated chromatin accessibility is critical for the 2C-like state to occur, yet the underlying molecular mechanisms remain elusive. Zscan4 exhibits burst expression in 2C embryos and 2C-like cells.

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Conventional ischemia-free liver transplantation (CIFLT) represents a pioneering procedure that circumvents ischemia-reperfusion injury to livers throughout the transplant procedure. However, its complexity has limited its widespread adoption. This study introduced a simplified ischemia-free liver transplantation (SIFLT) technique by providing an alternating flow of the portal vein and hepatic artery, demonstrating its efficacy and safety.

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Stretchable electronic devices that conduct strain-related electronic performances have drawn extensive attention, functioning as mechanical sensors, actuators, and stretchable conductors. Although strain-insensitive or strain-responsive nature is well-achieved separately, it remains challenging to combine these two characteristics in one single device, which will offer versatile adaptability in various working situations. Herein, a hybrid material with sign-switchable Poisson's ratio (SSPR) is developed by combining a phase-change gel based reentrantreentrant honeycomb pattern and a polydimethylsiloxane film.

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Cellular metabolism modulates dendritic cell (DC) maturation and activation. Migratory dendritic cells (mig-DCs) travelling from the tissues to draining lymph nodes (dLNs) are critical for instructing adaptive immune responses. However, how lipid metabolites influence mig-DCs in autoimmunity remains elusive.

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Background: The effectiveness of the anastomosis method for laparoscopic left colectomy (LLC) remains inconclusive. Thus, a systematic review and meta-analysis were conducted to compare the outcomes between intraperitoneal anastomosis (IPA) and extraperitoneal anastomosis(EPA)in LLC.

Methods: PubMed, Embase, the Cochrane Library, CNKI, and WanFangData were systematically searched for relevant literature.

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  • Accurate extraction of heart rate from photoplethysmography (PPG) signals is difficult due to issues like motion artifacts and signal loss, leading to challenges in measurement.
  • The authors present KID-PPG, a new deep learning model that combines expert knowledge with advanced techniques to improve heart rate tracking by addressing motion artifact removal, signal degradation assessment, and realistic analysis.
  • KID-PPG was tested on the PPGDalia dataset, achieving superior accuracy with an average error of 2.85 beats per minute, demonstrating that using prior knowledge can significantly enhance deep learning performance in biomedical applications.
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  • The study investigates how the Wnt-Notch signaling pathways influence cell fate and tissue regeneration, particularly focusing on their connection to cell cycle regulation and how this balance is affected by p21 loss in aging mouse models.
  • Results showed that in aging mice lacking p21, Wnt3 and β-Catenin were down-regulated while Notch1 and Hes1 were up-regulated, leading to changes in intestinal stem cell populations and increased intestinal cell turnover.
  • The research identified E2F1 as a key transcriptional regulator linking p21 to the Wnt-Notch signaling pathways, with the overexpression of p21 restoring balance and homeostasis in intestinal stem cell functions.
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Background: Observational studies have indicated a potential association between autoimmune diseases and the occurrence of Osteoarthritis (OA), with an increased risk of mortality among affected patients. However, whether a causal relationship exists between the two remains unknown.

Methods: In the Mendelian randomization (MR) study, we accessed exposure Genome-wide association study (GWAS) data from both the MRC Integrative Epidemiology Unit (MRC-IEU) and the FinnGen consortium.

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  • There is an increasing demand for effective automated seizure detection algorithms using EEG data due to the rise of long-term monitoring needs.
  • This paper introduces a unified framework to standardize validation methods for these algorithms, addressing the inconsistencies in datasets, methodologies, and performance measures.
  • The authors also present the EEG 10-20 seizure detection benchmark, along with an open-source software library, to help evaluate existing algorithms and enhance research in seizure detection for better outcomes for individuals with epilepsy.*
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Objective: Evaluating the safety and efficacy of implanting a liver with islet grafts into patients with end-stage liver disease and diabetes mellitus (DM).

Background: DM and end-stage liver diseases are significant health concern worldwide, often coexisting and mutually influencing each other. Addressing both diseases simultaneously is paramount.

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  • Geopolymer foam concrete (GFC) is an eco-friendly insulation material that enhances building energy efficiency but faces challenges with foam stability in salty, alkaline conditions.
  • In this study, different blowing agents (triterpene saponin, sodium dodecyl sulfate, and cetyltrimethylammonium bromide) were tested alongside fly ash, calcium carbide slag, and Glauber's salt to produce GFC and assess its mechanical properties.
  • Results indicate that triterpene saponin creates a stable liquid film in the GFC, improving its resistance to destabilization, resulting in smaller pore sizes and varied hydration products that enhance water retention and overall strength.
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Background: TANK-binding kinase 1 (TBK1) is a pivotal mediator of innate immunity, activated by receptors such as mitochondrial antiviral signaling protein (MAVS), stimulator of interferon genes (STING), and TIR-domain-containing adaptor inducing interferon-β (TRIF). It modulates immune responses by exerting influence on the type I interferons (IFN-Is) signaling and the nuclear factor kappa-light-chain-enhancer of activated B cells (NF-κB) pathways, Over the past few years, TBK1 multifaceted role in both immune and inflammatory responses is increasingly recognized.

Methods And Results: This review aims to scrutinize how TBK1 operates within the NF-κB pathway and the interferon regulatory transcription factor 3 (IRF3)-dependent IFN-I pathways, highlighting the kinases and other molecules involved in these processes.

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  • The CDCA7 protein, involved in ICF syndrome, has a unique carboxyl-terminal cysteine-rich domain (CRD) that binds to a specific DNA structure.
  • This binding occurs preferentially with a hemi-methylated non-B DNA form, distinguishing CDCA7 from ICF mutants.
  • CDCA7's concentration in specific chromatin regions during DNA replication suggests it plays a crucial role in directing DNA methylation at juxtacentromeric regions.
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Ionic diodes with environmentally modulated ion-rectifying characteristics have attracted much attention and show great promise in the construction of smart devices with environmental adaptability. One immediate challenge is to integrate stimuli responsiveness and ion rectification into one single ionic diode, which requires a close cooperation of chemical principles and device technologies. Herein, an ionic diode based on a photoresponsive hydrogel with optically mediated ion-rectifying performances is introduced.

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Background: Prognostic assessment for colorectal cancer (CRC) displays substantial heterogeneity, as reliance solely on traditional TNM staging falls short of achieving precise individualized predictions. The integration of diverse biological information sources holds the potential to enhance prognostic accuracy.

Objective: To establish a comprehensive multi-tiered precision prognostic evaluation system for CRC by amalgamating gene expression profiles, clinical characteristics, and tumor microsatellite instability (MSI) status in CRC patients.

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A novel Fe-MoO nanozyme, engineered with enhanced peroxidase (POD)-like activity through strategic doping and the creation of oxygen vacancies, is introduced to catalyze the oxidation of TMB with high efficiency. Furthermore, Fe-MoO is responsive to single electron transfer (SET) and hydrogen atom transfer (HAT) mechanisms related to antioxidants and can serve as a desirable nanozyme for total antioxidant capacity (TAC) determination. The TAC colorimetric platform can reach a low LOD of 0.

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In this study, in the presence of a certain amount of cuprous chloride catalyst and the synergistic action of ligand and base, the P-H bond activation of secondary biarylphosphine oxides and the attack on the β-site of orthoaryl groups were investigated. Phosphafluorene oxide was synthesized by C-H bond activation and an intramolecular dehydrogenation coupling reaction to construct a C-P bond. Subsequently, we conducted a control experiment and made reasonable speculations about its mechanism.

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is the third most common infectious pathogen in AIDS patients and leads to the highest death rate in Guangxi, China. The lack of reliable biomarkers is one of the major obstacles in current clinical diagnosis, which largely contributes to this high mortality. Here, we present a study that aimed at identifying diagnostic biomarker candidates through genome-wide prediction and functional annotation of secreted proteins.

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Thermal storage cement-based materials, formed by integrating phase change materials into cementitious materials, exhibit significant potential as energy storage materials. However, poor thermal conductivity severely limits the development and application of these materials. In this study, an amorphous SiO shell is encapsulated on a graphite surface to create a novel thermally modified admixture (C@SiO).

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Mouse embryonic stem cells (mESCs) sporadically transition to a transient totipotent state that resembles blastomeres of the two-cell (2C) embryo stage, which has been proposed to contribute to exceptional genomic stability, one of the key features of mESCs. However, the biological significance of the rare population of 2C-like cells (2CLCs) in ESC cultures remains to be tested. Here we generated an inducible reporter cell system for specific elimination of 2CLCs from the ESC cultures to disrupt the equilibrium between ESCs and 2CLCs.

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Oncolytic viruses (OVs), a group of replication-competent viruses that can selectively infect and kill cancer cells while leaving healthy cells intact, are emerging as promising living anticancer agents. Unlike traditional drugs composed of non-replicating compounds or biomolecules, the replicative nature of viruses confer unique pharmacokinetic properties that require further studies. Despite some pharmacokinetics studies of OVs, mechanistic insights into the connection between OV pharmacokinetics and antitumor efficacy remain vague.

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