Publications by authors named "Dan Du"

Oxidative stress plays a crucial role in organ aging and related diseases, yet the endogenous regulators involved remain largely unknown. This work highlights the importance of metabolic homeostasis in protecting against oxidative stress in the large intestine. By developing a low-input and user-friendly pipeline for the simultaneous profiling of five distinct cysteine (Cys) states, including free SH, total Cys oxidation (Sto), sulfenic acid (SOH), S-nitrosylation (SNO), and S-glutathionylation (SSG), we shed light on Cys redox modification stoichiometries and signaling with regional resolution in the aging gut of monkeys.

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Background: MYB transcription factors (TFs) play crucial roles in the response to diverse abiotic and biotic stress factors in plants. In this study, the GsMYB10 gene encoding a MYB-CC transcription factor was cloned from wild soybean BW69 line. However, there is less report on the aluminum (Al)-tolerant gene in this subfamily.

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Objectives: Cerebral ischemic stroke is a leading cause of death worldwide. Though timely reperfusion reduces the infarction size, it exacerbates neuronal apoptosis due to oxidative stress. Nuclear factor erythroid 2-related factor 2 (Nrf2) is a transcription factor regulating the expression of antioxidant enzymes.

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Article Synopsis
  • The study addresses the challenges in evaluating large language models (LLMs) in pharmacology due to the absence of a comprehensive test set.
  • It creates a specialized pharmacology test set with tasks like drug information retrieval and trend summarization, comparing the performance of GPT-3.5 and GPT-4.
  • The findings show that while these models excel in understanding and summarizing pharmacological information, they struggle with specific tasks like drug identification and interaction retrieval, suggesting that enhancing them with retrieval-augmented generation or specialized knowledge bases could improve their efficacy in pharmacology.
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Background And Objective: Prostate cancer is a major cause of cancer-related morbidity and mortality in men globally. The pathogenesis involves complex interactions between genetic mutations and environmental factors, activating multiple signaling pathways, especially Wnt/β-catenin, PI3K/Akt, and NF-κB pathways. Tumor suppressor genes and are key inhibitors of these pathways, crucial in suppressing tumor growth and metastasis.

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Sunitinib is a small-molecule tyrosine kinase inhibitor associated with the side-effect of liver injury. The impaired cell type in liver and the hepatotoxicity mechanisms is still unclear. Spatial metabolomics, transmission electron microscopy, immunofluorescence co-staining, and isolation of bile duct cells and liver sinusoidal endothelial cells (LSECs) were used to evaluate the zonated hepatotoxicity of sunitinib.

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  • T helper 2 (Th2) cells play a dual role in the body by fighting parasites and aiding tissue repair, but they can also cause problems in conditions like asthma and tissue fibrosis.
  • Research showed that Th2 cells from asthma patients have increased levels of a protein called HIF2α, which is crucial for their pathogenic development.
  • Targeting HIF2α could be a potential treatment strategy for asthma, as its inhibition was found to reduce harmful Th2 cell differentiation and decrease airway inflammation.
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Mesenchymal stem cell (MSC)-based therapies have emerged as promising methods for regenerative medicine; however, how to precisely enhance their tissue repair effects is still a major question in the field. Circulating extracellular vesicles (EVs) from diseased states carry diverse pathological information and affect the functions of recipient cells. Based on this unique property, we report that disease-derived circulating EV (disease-EV) preconditioning is a potent strategy for precisely enhancing the tissue repair potency of MSCs in diverse disease models.

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Sphingosine-1-phosphate (S1P) is a sphingolipid metabolic product produced via the phosphorylation of sphingosine by sphingosine kinases (SPHKs), serving as a powerful modulator of various cellular processes through its interaction with S1P receptors (S1PRs). Currently, this incompletely understood mechanism in pancreatic diseases including pancreatitis and pancreatic cancer, largely limits therapeutic options for these disorders. Recent evidence indicates that S1P significantly contributes to pancreatic diseases by modulating inflammation, promoting pyroptosis in pancreatic acinar cells, regulating the activation of pancreatic stellate cells, and affecting organelle functions in pancreatic cancer cells.

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Background: Rosacea is more common in women and Caucasians, leading to little research on rosacea in Asian men. Additionally, there is limited research on the patients across different age groups.

Aims: The aim of this study is to analyze and compare the characteristics of male patients of rosacea among different age groups.

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Article Synopsis
  • - Rosacea is a common, chronic skin condition affecting 1% to 20% of the global population, marked by symptoms like facial redness, small bumps, and potential eye issues, caused by a blend of genetic, environmental, and immune factors.
  • - Recent research highlights specific molecular mechanisms involved in rosacea, such as the roles of LL37, TLR2, and mTOR pathways, which help activate immune cells and produce inflammatory cytokines, ultimately driving inflammation and blood vessel growth.
  • - Current treatments for rosacea aim at managing symptoms, but new understanding of its underlying biology is paving the way for more precise therapies, including drugs that target particular cytokines and signaling pathways like IL-17 and JAK.
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Immunity and inflammation in pulmonary arterial hypertension (PAH) has gained more attention. This research aimed to investigate the potential causal connections between 731 immunophenotypes and the likelihood of developing PAH. We obtained immunocyte data and PAH from openly accessible database and used Mendelian randomization (MR) analysis to evaluate the causal association between each immunophenotype and PAH.

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  • * Researchers analyzed data from the FDA Adverse Event Reporting System (FAERS) spanning from 2004 to 2022 to identify agents reported to trigger TLS and assess their associated risks through disproportionality analysis.
  • * Results revealed that 164 antineoplastic agents were linked to TLS, with rituximab being the most frequently reported, while tagraxofusp showed the highest adverse reaction signal strength, indicating varying risks across different medications.
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  • Rapid and accurate sensors for detecting organophosphorus pesticide residues are urgently needed due to contamination concerns.
  • Researchers developed a Zr-based metal-organic framework (MOF) that minimizes interference from external substances and enhances detection performance through a unique redox-free bimodal approach.
  • The sensor uses a dual-mode colorimetric and fluorescence method for detecting paraoxon, allowing quick and easy testing via a portable smartphone platform without interference from other redox substances.
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Acute pancreatitis (AP) is a potentially fatal condition with no targeted treatment options. Although inhibiting xanthine oxidase (XO) in the treatment of AP has been studied in several experimental models and clinical trials, whether XO is a target of AP and what its the main mechanism of action is remains unclear. Here, we aimed to re-evaluate whether XO is a target aggravating AP other than merely generating reactive oxygen species that trigger AP.

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Article Synopsis
  • * They are increasingly used in biomedical diagnosis for amplifying catalytic signals, allowing for improved detection of diseases and biomarkers, including those related to cancers and other disorders.
  • * The review covers the synthesis of nanozymes, techniques to enhance their effectiveness, their applications in disease detection, and future trends and challenges in the field.
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To evaluate the protective effect of LIPUS at the early stage of brain trauma in rats, 45 rats were randomly divided into 3 groups: sham ( = 15), TBI ( = 15) and LIPUS treatment groups ( = 15). Ipsilateral and contralateral cortical and thalamic parameters obtained by diffusion tensor imaging (DTI) and fast low-angle shot magnetic resonance imaging (FLASH-MRI) were measured at different times after trauma. For fractional anisotropy (FA) and T2 values, two-way repeated measures ANOVA with Tukey's post hoc was used for intergroup comparisons.

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Background: Recent advancements in basic medicine and epidemiology suggest a potential influence of blood pressure on scar formation, yet the specifics of this relationship are not fully understood. This study aims to clarify the causal link between blood pressure and the development of pathological scars using Mendelian randomization (MR).

Methods: This study employed genetic variants closely linked to blood pressure as instrumental variables to explore the relationship between blood pressure and pathological scars.

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Background: Recent advancements in artificial intelligence (AI) and large language models (LLMs) have shown potential in medical fields, including dermatology. With the introduction of image analysis capabilities in LLMs, their application in dermatological diagnostics has garnered significant interest. These capabilities are enabled by the integration of computer vision techniques into the underlying architecture of LLMs.

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Backgrounds: Segments and tone are important sub-syllabic units that play large roles in lexical processing in tonal languages. However, their roles in lexical processing remain unclear, and the event-related potential (ERP) technique will benefit the exploration of the cognitive mechanism in lexical processing.

Methods: The high temporal resolution of ERP enables the technique to interpret rapidly changing spoken language performances.

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Context: In China, HUANGQI is widely used for the treatment of Alzheimer's disease (AD). However, a comprehensive understanding of its mechanism of anti-AD effects is lacking.

Objective: To explore the active ingredients of HUANGQI and its potential targets and mechanisms of action in AD.

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Article Synopsis
  • Magnesium (Mg) deficiency is linked to a higher risk of colorectal cancer (CRC), with research identifying 160 genes that show more mutations in tumors with low Mg levels, including important cancer-related genes like KMT2C and ERBB3.
  • Interestingly, tumors with high Mg levels also showed more mutations in key CRC initiation genes, such as TP53 and APC.
  • These findings suggest that low Mg may activate processes that help cancer cells migrate and invade, but Mg supplementation could potentially help prevent or treat CRC by reducing this harmful activity.
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Introduction: Expansins (EXPs) are essential components of the plant cell wall that function as relaxation factors to directly promote turgor-driven expansion of the cell wall, thereby controlling plant growth and development and diverse environmental stress responses. EXPs genes have been identified and characterized in numerous plant species, but not in sweetpotato.

Results And Methods: In the present study, a total of 59 EXP genes unevenly distributed across 14 of 15 chromosomes were identified in the sweetpotato genome, and segmental and tandem duplications were found to make a dominant contribution to the diversity of functions of the IbEXP family.

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Background: At present, drug development for treating Alzheimer's disease (AD) is still highly challenging. Eriodictyol (ERD) has shown great potential in treating AD, but its molecular mechanism is unknown.

Objective: We aimed to explore the potential targets and mechanisms of ERD in the treatment of AD through network pharmacology, molecular docking, and molecular dynamics simulations.

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BimC family proteins are bipolar motor proteins belonging to the kinesin superfamily which promote mitosis by crosslinking and sliding apart antiparallel microtubules. Understanding the binding mechanism between the kinesin and the microtubule is crucial for researchers to make advances in the treatment of cancer and other malignancies. Experimental research has shown that the ion concentration affects the function of BimC significantly.

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