Improving LASSO performance for Grey Leaf Spot disease resistance prediction based on genotypic data by considering all possible two-way SNP interactions.

Disease resistance prediction using genotypic data has been widely pursued in animal as well as plant research, mostly in cases where genotypic data can be readily available for a large number of subjects. With the evolution of SNP marker genotyping technology and the consequent cost reduction for genotyping thousands of SNP markers, significant research effort is being undertaken in the statistics and machine learning community to perform efficient analysis of these multidimensional datasets. For large plant breeding programs, besides identifying biomarkers associated with disease resistance, developing accurate predictive models of the phenotype based on the genotype alone is one of the most relevant scientific goals, as it allows for efficient selection without having to grow and phenotype every individual.

Supplementation with estradiol-17beta before the last gonadotropin-releasing hormone injection of the Ovsynch protocol in lactating dairy cows.

The aim of this study was to determine whether an increase in circulating estrogen concentrations would increase percentage pregnant per artificial insemination (PP/AI) in a timed AI protocol in high-producing lactating dairy cows. We analyzed only cows having a synchronized ovulation to the last GnRH of the Ovsynch protocol (867/1,084). The control group (n = 420) received Ovsynch (GnRH--7 d--PGF(2alpha)--56 h--GnRH--16 h--timed AI).

Supplemental choline for prevention and alleviation of fatty liver in dairy cattle.

Two experiments were conducted to evaluate if supplementing rumen-protected choline (RPC; Reashure, Balchem Encapsulates, Slate Hill, NY) could prevent or alleviate fatty liver in dairy cattle. The first experiment evaluated the effect of supplementing RPC on hepatic triacylglycerol (TAG) accumulation during fatty liver induction. Twenty-four dry cows between 45 to 60 d prepartum were paired by body weight (BW) and body condition score (BCS) and randomly assigned to control or supplementation with 15 g of choline as RPC/d.

Genetic analysis of somatic cell scores in US Holsteins with a Bayesian mixture model.

The objective of this study was to apply finite mixture models to field data for somatic cell scores (SCS) for estimation of genetic parameters. Data were approximately 170,000 test-day records for SCS from first-parity Holstein cows in Wisconsin. Five different models of increasing level of complexity were fitted.

Survey of management practices on reproductive performance of dairy cattle on large US commercial farms.

A survey regarding general management, sire selection, reproductive management, inseminator training and technique, heat abatement, body condition scoring, facility design and grouping, nutrition, employee training and management, and animal health and bio-security was carried out from March to September of 2004 in 153 herds in the Alta Genetics (Watertown, WI) Advantage Progeny Testing Program. A total of 103 herds (67.3%) completed the survey.