Publications by authors named "D J Slotboom"

This study investigates the potential of energy-coupling factor (ECF) transporters as promising anti-infective targets to combat antimicrobial resistance (AMR). ECF transporters, a subclass of ATP-binding cassette (ABC) transporters, facilitate the uptake of B-vitamins across bacterial membranes by utilizing ATP as an energy source. Vitamins are essential cofactors for bacterial metabolism and growth, and they can either be synthesized de novo or absorbed from the environment.

View Article and Find Full Text PDF

Cellular homeostasis depends on the supply of metabolic energy in the form of ATP and electrochemical ion gradients. The construction of synthetic cells requires a constant supply of energy to drive membrane transport and metabolism. Here, we provide synthetic cells with long-lasting metabolic energy in the form of an electrochemical proton gradient.

View Article and Find Full Text PDF
Article Synopsis
  • ASCT2 is a crucial protein that exchanges neutral amino acids to maintain balance in cellular amino acid levels.
  • The research reveals that ASCT2 binds three sodium ions for each amino acid it transports and has unique mechanisms that prevent sodium ion leakage, differing from similar transporters like EAATs.
  • Unlike EAATs, ASCT2's rigid structure prevents it from switching to a mode that concentrates amino acids, keeping it functionally locked in an exchange mode.
View Article and Find Full Text PDF

The emergence of new protein functions is crucial for the evolution of organisms. This process has been extensively researched for soluble enzymes, but it is largely unexplored for membrane transporters, even though the ability to acquire new nutrients from a changing environment requires evolvability of transport functions. Here, we demonstrate the importance of environmental pressure in obtaining a new activity or altering a promiscuous activity in members of the amino acid-polyamine-organocation (APC)-type yeast amino acid transporters family.

View Article and Find Full Text PDF

The processes of nutrient uptake and signal sensing are crucial for microbial survival and adaptation. Membrane-embedded proteins involved in these functions (transporters and receptors) are commonly regarded as unrelated in terms of sequence, structure, mechanism of action and evolutionary history. Here, we analyze the protein structural universe using recently developed artificial intelligence-based structure prediction tools, and find an unexpected link between prominent groups of microbial transporters and receptors.

View Article and Find Full Text PDF