Publications by authors named "D D Munro"

Article Synopsis
  • RNA sequencing can uncover various types of transcriptional regulation beyond just gene expression, but current studies often struggle with the complexity of analyzing multiple RNA characteristics.
  • Pantry is a new framework that efficiently generates diverse RNA phenotypes from sequencing data and integrates these phenotypes with genetic data using QTL mapping and other analyses.
  • By applying Pantry to existing datasets, researchers found a significant increase in gene associations, highlighting the importance of analyzing multiple RNA modalities for discovering unique gene-trait relationships and understanding the mechanisms behind genetic regulation.
View Article and Find Full Text PDF

Background/objectives: High-throughput single-cell RNA sequencing (scRNA-seq) workflows produce libraries that demand extensive sequencing. However, standard next-generation sequencing (NGS) methods remain expensive, contributing to the high running costs of single-cell experiments and often negatively affecting the sample numbers and statistical strength of such projects. In recent years, a plethora of new sequencing technologies have become available to researchers through several manufacturers, often providing lower-cost alternatives to standard NGS.

View Article and Find Full Text PDF

Genome-wide association studies typically evaluate the autosomes and sometimes the X Chromosome, but seldom consider the Y or mitochondrial (MT) Chromosomes. We genotyped the Y and MT Chromosomes in heterogeneous stock (HS) rats (Rattus norvegicus), an outbred population created from 8 inbred strains. We identified 8 distinct Y and 4 distinct MT Chromosomes among the 8 founders.

View Article and Find Full Text PDF

Tumor suppressor p53-binding protein 1 (53BP1) regulates DNA end joining in lymphocytes, diversifying immune antigen receptors. This involves nucleosome-bound 53BP1 at DNA double-stranded breaks (DSBs) recruiting Rap1-interacting factor 1 homolog (RIF1) and shieldin, a poorly understood DNA-binding complex. The 53BP1-RIF1-shieldin axis is pathological in BRCA1-mutated cancers, blocking homologous recombination (HR) and driving illegitimate nonhomologous end joining (NHEJ).

View Article and Find Full Text PDF

In modern ophthalmic surgery, an intraocular lens (IOL) is commonly implanted into the patient's eye with an IOL injector. Many injectors are available, showing various technological differences, from the early manually loaded injector systems to the modern preloaded injectors. This review aims to give a concise overview of the defining characteristics of injector models and draws attention to complications that may occur during IOL implantation.

View Article and Find Full Text PDF