Extracting information on virus-human interactions and on antiviral compounds based on automated analysis of large text collections.

The development of effective antivirals is of great importance due to the threat associated with the rapid spread of viral infections. The accumulation of data in scientific publications and in databases of biologically active compounds provides an opportunity to extract specific information about interactions between chemicals and their viral and host targets. This information can be used for elucidation of knowledge about potential antiviral activity of chemical compounds, their side effects and toxicities.

Prediction of Protein Secondary Structures Based on Substructural Descriptors of Molecular Fragments.

The accurate prediction of secondary structures of proteins (SSPs) is a critical challenge in molecular biology and structural bioinformatics. Despite recent advancements, this task remains complex and demands further exploration. This study presents a novel approach to SSP prediction using atom-centric substructural multilevel neighborhoods of atoms (MNA) descriptors for protein molecular fragments.

Quantitative Prediction of Human Immunodeficiency Virus Drug Resistance.

Drug resistance of pathogens, including viruses, is one of the reasons for decreased efficacy of therapy. Considering the impact of HIV type 1 (HIV-1) on the development of progressive immune dysfunction and the rapid development of drug resistance, the analysis of HIV-1 resistance is of high significance. Currently, a substantial amount of data has been accumulated on HIV-1 drug resistance that can be used to build both qualitative and quantitative models of HIV-1 drug resistance.

The influence of feature-based attention and response requirements on ERP correlates of auditory awareness.

In search for the neural correlates of consciousness (NCCs), it is important to isolate the true NCCs from their prerequisites, consequences, and co-occurring processes. To date, little is known about how attention affects the event-related potential (ERP) correlates of auditory awareness and there is contradictory evidence on whether one of them, the late positivity (LP), is affected by response requirements. By implementing a GO-NOGO design with target and nontarget stimuli, we controlled for feature-based attention and response requirements in the same experiment, while participants rated their awareness using a perceptual awareness scale.