Publications by authors named "Craig O Matkin"

Highly social top marine predators, including many cetaceans, exhibit culturally learned ecological behaviours such as diet preference and foraging strategy that can affect their resilience to competition or anthropogenic impacts. When these species are also endangered, conservation efforts require management strategies based on a comprehensive understanding of the variability in these behaviours. In the northeast Pacific Ocean, three partially sympatric populations of resident killer whales occupy coastal ecosystems from California to Alaska.

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For the 40 years after the end of commercial whaling in 1976, humpback whale populations in the North Pacific Ocean exhibited a prolonged period of recovery. Using mark-recapture methods on the largest individual photo-identification dataset ever assembled for a cetacean, we estimated annual ocean-basin-wide abundance for the species from 2002 through 2021. Trends in annual estimates describe strong post-whaling era population recovery from 16 875 (± 5955) in 2002 to a peak abundance estimate of 33 488 (± 4455) in 2012.

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Using DNA methylation profiles ( = 15,456) from 348 mammalian species, we constructed phyloepigenetic trees that bear marked similarities to traditional phylogenetic ones. Using unsupervised clustering across all samples, we identified 55 distinct cytosine modules, of which 30 are related to traits such as maximum life span, adult weight, age, sex, and human mortality risk. Maximum life span is associated with methylation levels in subclass homeobox genes and developmental processes and is potentially regulated by pluripotency transcription factors.

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Article Synopsis
  • Epigenetic techniques are changing the way scientists estimate the ages of long-lived species, particularly whales, by using molecular biomarkers from small tissue samples.
  • DNA methylation patterns have a strong correlation with age, leading to the creation of "epigenetic clocks" that can be used for age estimation in various animals, including humans and whales.
  • The study validates four epigenetic clocks based on skin samples from killer whales and bowhead whales, achieving median age estimation errors of 2.3-3.7 years, showcasing their potential benefits for wildlife conservation and management.
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Understanding the factors that cause endangered populations to either grow or decline is crucial for preserving biodiversity. Conservation efforts often address extrinsic threats, such as environmental degradation and overexploitation, that can limit the recovery of endangered populations. Genetic factors such as inbreeding depression can also affect population dynamics but these effects are rarely measured in the wild and thus often neglected in conservation efforts.

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Killer whales (Orcinus orca) are top predators throughout the world's oceans. In the North Pacific, the species is divided into three ecotypes-resident (fish-eating), transient (mammal-eating), and offshore (largely shark-eating)-that are genetically and acoustically distinct and have unique roles in the marine ecosystem. In this study, we examined the year-round distribution of killer whales in the northern Gulf of Alaska from 2016 to 2020 using passive acoustic monitoring.

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Article Synopsis
  • - Organochlorine (OC) profiles act as chemical "fingerprints" to identify where different populations of North Pacific killer whales forage, with levels and patterns of OCs varying based on prey and geographic area.
  • - A study analyzed biopsy blubber samples from 10 killer whale populations, finding that transients (mammal-eating) had higher OC concentrations than residents (fish-eating), and adult males consistently had higher levels than adult females across both ecotypes.
  • - The findings highlight distinct foraging areas among killer whale populations and link high OC exposure to potential health risks, including reproductive issues and immune system problems, providing critical data for assessing health risks in these animals.
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Odontocete sounds are produced by two pairs of phonic lips situated in soft nares below the blowhole; the right pair is larger and is more likely to produce clicks, while the left pair is more likely to produce whistles. This has important implications for the cultural evolution of delphinid sounds: the greater the physical constraints, the greater the probability of random convergence. In this paper the authors examine the call structure of eight killer whale populations to identify structural constraints and to determine if they are consistent among all populations.

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Killer whale populations may differ in genetics, morphology, ecology, and behavior. In the North Pacific, two sympatric populations ("resident" and "transient") specialize on different prey (fish and marine mammals) and retain reproductive isolation. In the eastern North Atlantic, whales from the same populations have been observed feeding on both fish and marine mammals.

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Global climate change during the Late Pleistocene periodically encroached and then released habitat during the glacial cycles, causing range expansions and contractions in some species. These dynamics have played a major role in geographic radiations, diversification and speciation. We investigate these dynamics in the most widely distributed of marine mammals, the killer whale (Orcinus orca), using a global data set of over 450 samples.

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The difficulties associated with detecting population boundaries have long constrained the conservation and management of highly mobile, wide-ranging marine species, such as killer whales (Orcinus orca). In this study, we use data from 26 nuclear microsatellite loci and mitochondrial DNA sequences (988bp) to test a priori hypotheses about population subdivisions generated from a decade of killer whale surveys across the northern North Pacific. A total of 462 remote skin biopsies were collected from wild killer whales primarily between 2001 and 2010 from the northern Gulf of Alaska to the Sea of Okhotsk, representing both the piscivorous "resident" and the mammal-eating "transient" (or Bigg's) killer whales.

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Article Synopsis
  • Ultrasonic whistles, which were previously identified in North Atlantic killer whales, were also discovered in the eastern North Pacific and western North Pacific killer whales, indicating a broader occurrence than previously believed.
  • The study documented these whistles in two encounters with eastern North Pacific offshore killer whales and one with western North Pacific killer whales of an unknown type.
  • The ultrasonic whistles were characterized by being highly stereotyped, with most displaying downsweep contours, suggesting that certain sound patterns can be shared among killer whales in different ocean regions.
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Article Synopsis
  • Marine top predators use chemical signals from their prey to determine diet and geographic origins.
  • A study of North Pacific killer whales examined chemical tracers in blubber samples, revealing distinct dietary differences among offshore killer whales compared to resident and transient groups.
  • Findings indicate that offshore killer whales represent a separate ecotype and forage further south than previously known, while resident and transient populations exhibit varying diets linked to their geographic locations.
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