Description of Cohnella rhizoplanae sp. nov., isolated from the root surface of soybean (Glycine max).

A Gram-staining-positive, aerobic bacterium, designated strain JJ-181, was isolated from the root surface of soybean. Based on the 16S rRNA gene sequence similarities, strain JJ-181 was grouped into the genus Cohnella, most closely related to Cohnella hashimotonis F6_2S_P_1 (98.85%) and C.

How socioeconomic and structural barriers influence dental care among transgender people.

Background: While recent US policies restrict access to healthcare and resulting health disparities among the transgender community, little is known about oral health access and utilization among this population. This study assessed self-reported access to dental care among transgender adults living in the United States.

Method: The study sample included 1,284,526 observations representing a weighted population of 290,000,163 from Behavioral Risk Factor and Surveillance Survey (BRFSS) datasets.

Genomic perspective on the bacillus causing paratyphoid B fever.

Paratyphoid B fever (PTB) is caused by an invasive lineage (phylogroup 1, PG1) of Salmonella enterica serotype Paratyphi B (SPB). However, little was known about the global population structure, geographic distribution, and evolution of this pathogen. Here, we report a whole-genome analysis of 568 historical and contemporary SPB PG1 isolates, obtained globally, between 1898 and 2021.

Complete genome sequence of two strains CIP 112228 and CIP 112229, isolated from human fecal samples.

is one of the representative bacterial species of the human gut microbiome. We report the complete genome sequence of two strains, CIP 112228 and CIP 112229, isolated from two healthy volunteers.

Oral sodium supplementation on growth and hypertension in preterm infants: an observational cohort study.

Objective: To evaluate the association between enteral sodium supplementation on growth and hypertension (HTN) in preterm infants.

Study Design: A retrospective cohort study of infants born between 22-32 weeks and weighing 450-1500 grams (N = 821). Enteral sodium supplementation amounts, systolic blood pressures (SBP), weight gain, and other infant and maternal risk factors for HTN were electronically extracted.

sp. nov., isolated from the nose, lung, and liver of rabbits.

A taxogenomic study of three strains (3986, 51.81, and JF 2415) isolated from rabbits between 1972 and 2000 led to the description of a new species. The highest sequence similarity of the 16S rRNA gene was found to NCTC 10212 (96.

The best of both worlds: a proposal for further integration of names into the International Code of Nomenclature of Prokaryotes.

The naming of prokaryotes is governed by the International Code of Nomenclature of Prokaryotes (ICNP) and partially by the International Code of Nomenclature for Algae, Fungi and Plants (ICN). Such codes must be able to determine names of taxa in a universal and unambiguous manner, thus serving as a common language across different fields and activities. This unity is undermined when a new code of nomenclature emerges that overlaps in scope with an established, time-tested code and uses the same format of names but assigns different nomenclatural status values to the names.

Genome sequence-based identification of strains and description of sp. nov.

Accurate taxonomy is essential for microbial biological resource centers, since the microbial resources are often used to support new discoveries and subsequent research. Here, we used genome sequence data, alongside matrix-assisted laser desorption/ionization time-of-flight mass spectrometer biotyper-based protein profiling, to accurately identify six complex strains. This approach effectively identified distinct species within the complex, including , "," and .

HIV-1 treatment timing shapes the human intestinal memory B-cell repertoire to commensal bacteria.

HIV-1 infection causes severe alterations of gut mucosa, microbiota and immune system, which can be curbed by early antiretroviral therapy. Here, we investigate how treatment timing affects intestinal memory B-cell and plasmablast repertoires of HIV-1-infected humans. We show that only class-switched memory B cells markedly differ between subjects treated during the acute and chronic phases of infection.

sp. nov., isolated from the gut of the beetle , and sp. nov., isolated from a stick insect rearing cage.

Two strains of identified from different experiments are proposed to represent new species. Strain WLa1L2M3 was isolated from the digestive tract of an beetle larva. Strain 09-1422 was isolated from a cage housing the stick insect .

sp. nov. and sp. nov., isolated from the rhizosphere of .

Two Gram-stain-positive, aerobic, endospore-forming bacterial strains, isolated from the rhizosphere of were studied for their detailed taxonomic allocation. Based on 16S rRNA gene sequence similarity comparisons, both strains JJ-7 and JJ-60 were shown to be members of the genus . Strain JJ-7 was most closely related to the type strains of (99.

Serratia silvae sp. nov., Isolated from Forest Soil.

The Gram-negative, oxidase-negative, catalase-positive, rod-shaped strain Arafor3 was isolated from forest soil (France). Comparative 16S rRNA gene analysis and phylogenetic analysis based on (1) multilocus sequence analysis (MLSA) with four housekeeping genes (atpD, gyrB, infB and rpoB) and (2) genomes indicated that strain Arafor3 shared 98.83% 16S rRNA gene sequence similarity with the type strain of Serratia fonticola DSM 4576 and was closely related to this same strain in the MLSA and in the phylogenomic tree reconstruction.

sp. nov., isolated from the rhizosphere, and reclassification of as comb. nov.

A Gram-stain-positive, facultative anaerobic endospore-forming bacterium, which originated from roots/rhizosphere of maize (), was investigated for its taxonomic position. On the basis of 16S rRNA gene sequence similarities, strain JJ-3 was grouped together with species showing the highest similarities to (98.8 %) and the three species , and (all 98.

sp. nov. isolated from roots.

An aerobic, Gram-staining-positive, endospore-forming bacterium, isolated from the rhizosphere of roots of maize (), was taxonomically studied. On the basis of 16S rRNA gene sequence similarity comparisons, strain JJ-125 clustered together with species of the genus and showed the highest similarities with (98.7 %).

Paenibacillus allorhizoplanae sp. nov. from the rhizoplane of a Zea mays root.

A Gram-positive staining, aerobic, endospore-forming bacterial strain, isolated from the rhizosphere of Zea mays was studied for its detailed taxonomic allocation. Based on the 16S rRNA gene sequence similarity comparisons, strain JJ-42 was shown to be a member of the genus Paenibacillus, most closely related to the type strain of Paenibacillus pectinilyticus (98.8%).

sp. nov., isolated from oak rhizosphere.

Strain RHZ10 was isolated from an oak rhizosphere sampled in Reims, France, and characterized to assess its taxonomy. Based on 16S rRNA gene sequence similarity, strain RHZ10 was affiliated to the genus and the closest species were NRRL B-2000 and ch24. Average nucleotide identity and digital DNA-DNA hybridization values were 77.

sp. nov. from maize roots.

A Gram-stain-positive, aerobic and endospore-forming bacterial strain, isolated from the root surface of maize () was taxonomically studied. It could be clearly shown that, based on 16S rRNA gene sequence similarity comparisons, strain JJ-63 is a member of the genus , most closely related to the type strain of (98.61%), followed by (98.

gen. nov., sp. nov., isolated from maize root rhizosphere.

A facultative anaerobic, Gram-stain-positive, endospore-forming bacterium, isolated from the rhizosphere of maize roots (), was taxonomically studied. Based on 16S rRNA gene sequence similarity comparisons, strain JJ-79 clustered only loosely with species and showed the highest similarity to (97.9%).

Population structure analysis and laboratory monitoring of Shigella by core-genome multilocus sequence typing.

The laboratory surveillance of bacillary dysentery is based on a standardised Shigella typing scheme that classifies Shigella strains into four serogroups and more than 50 serotypes on the basis of biochemical tests and lipopolysaccharide O-antigen serotyping. Real-time genomic surveillance of Shigella infections has been implemented in several countries, but without the use of a standardised typing scheme. Here, we study over 4000 reference strains and clinical isolates of Shigella, covering all serotypes, with both the current serotyping scheme and the standardised EnteroBase core-genome multilocus sequence typing scheme (cgMLST).

sp. nov., isolated from forest soil.

A bacterial strain, named For3, was isolated from forest soil sampled in Champenoux, France. Based on its 16S rRNA gene sequence, the strain was affiliated to the family and, more specifically, to the genus . The strain had 99.