Publications by authors named "Claudia I Keller Valsecchi"

Sex-specific differences in lifespan and ageing are observed in various species. In humans, women generally live longer but are frailer and suffer from different age-related diseases compared to men. The hallmarks of ageing, such as genomic instability, telomere attrition or loss of proteostasis, exhibit sex-specific patterns.

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Article Synopsis
  • - Heteromorphic sex chromosomes in multicellular eukaryotes determine sexual traits and reproductive roles, sometimes leading to dosage imbalances between sexes that are adjusted through dosage compensation (DC).
  • - Advances in genomics have revealed new insights into DC mechanisms in insects beyond traditional models like Drosophila, highlighting variations across different insect orders.
  • - The authors propose a new framework for identifying DC regulators in non-model insects by combining evolutionary, genomic, and functional methods to enhance our understanding of gene regulation evolution and its importance.
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  • - Structural resolution of protein interactions is crucial for studying mechanisms and disease variants, but many interactions remain unresolved due to limited tools, particularly those involving short linear motifs in disordered protein regions.
  • - AlphaFold-Multimer shows high sensitivity in predicting domain-motif structures using small protein fragments, but its effectiveness drops with longer fragments or full-length proteins.
  • - This research introduced a protein fragmentation strategy that successfully predicted new and potentially disease-related protein interfaces in neurodevelopmental disorders, leading to experimental validation of several interactions and highlighting both the promise and limitations of the AlphaFold-Multimer approach.
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The Anopheles mosquito is one of thousands of species in which sex differences play a central part in their biology, as only females need a blood meal to produce eggs. Sex differentiation is regulated by sex chromosomes, but their presence creates a dosage imbalance between males (XY) and females (XX). Dosage compensation (DC) can re-equilibrate the expression of sex chromosomal genes.

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In mammals, X-chromosomal genes are expressed from a single copy since males (XY) possess a single X chromosome, while females (XX) undergo X inactivation. To compensate for this reduction in dosage compared with two active copies of autosomes, it has been proposed that genes from the active X chromosome exhibit dosage compensation. However, the existence and mechanisms of X-to-autosome dosage compensation are still under debate.

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Diploid organisms contain a maternal and a paternal genome complement that is thought to provide robustness and allow developmental progression despite genetic perturbations that occur in heterozygosity. However, changes affecting gene dosage from the chromosome down to the individual gene level possess a significant pathological potential and can lead to developmental disorders (DDs). This indicates that expression from a balanced gene complement is highly relevant for proper cellular and organismal function in eukaryotes.

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Sex chromosomes induce potentially deleterious gene expression imbalances that are frequently corrected by dosage compensation (DC). Three distinct molecular strategies to achieve DC have been previously described in nematodes, fruit flies, and mammals. Is this a consequence of distinct genomes, functional or ecological constraints, or random initial commitment to an evolutionary trajectory? Here, we study DC in the malaria mosquito The and X chromosomes evolved independently but share a high degree of homology.

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Understanding the evolutionary and ecological roles of 'non-genetic' inheritance (NGI) is daunting due to the complexity and diversity of epigenetic mechanisms. We draw on insights from molecular and evolutionary biology perspectives to identify three general features of 'non-genetic' inheritance systems: (i) they are functionally interdependent with, rather than separate from, DNA sequence; (ii) precise mechanisms vary phylogenetically and operationally; and (iii) epigenetic elements are probabilistic, interactive regulatory factors and not deterministic 'epialleles' with defined genomic locations and effects. We discuss each of these features and offer recommendations for future empirical and theoretical research that implements a unifying inherited gene regulation (IGR) approach to studies of 'non-genetic' inheritance.

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