Seasonal Water-Column Structure Drives the Trophic Niche of Fish Communities on a Temperate Continental Shelf.

In seasonally stratified marine environments, the dynamics of benthic-pelagic coupling plays a crucial role in shaping food web structures and fisheries production. We examined fish food web structures across three distinct shelf areas in the Southern Sea of Korea (SSK) during both stratified (summer) and mixed (spring) water conditions using stable isotopes of carbon (δC) and nitrogen (δN). In spring, fish communities exhibited a broader range of δC values compared with summer, indicating more diverse feeding strategies.

Spatial Dynamics of Demersal Fish Assemblages off the Korean Coast in the East Sea.

This study assessed variations in demersal fish assemblages with respect to the study site and water depth. Seasonal samplings from May 2018 to March 2019 were conducted along the northern (Ayajin, Goseong) and southern (Hupo, Uljin) sites of the East Sea off the Korean coast, using commercial gill nets. Samples were collected at depths of ~50, ~80, ~150 m across the study sites, with concurrent monitoring of water column structures.

Temporal changes in the diet composition and trophic level of walleye pollock (Gadus chalcogrammus) inhabiting the middle-eastern coast of Korea.

The influences of oceanographic changes on diet composition and trophic level for pollock (Gadus chalcogrammus) inhabiting the East Sea off the Korean coast were examined based on stomach content and stable isotope analyses during 2016 and 2017. The diets of pollock consisted mainly of benthic crustaceans (particularly carid shrimps and euphausiids) and cephalopods, with a predominance of teleosts in the diets of larger individuals in deeper habitats. In 2016, amphipods, carid shrimps and cephalopods featured strongly in pollock diets, and the contribution of amphipods decreased in the diets of larger individuals and deeper depths.

Spatial and temporal variations in trophic structure of fish assemblages in the Yellow Sea revealed by C and N stable isotopes.

In this study, we assessed spatial and temporal variations in the trophic structure of fish assemblages in the Yellow Sea during spring and summer 2022 and compared their isotopic niches between the Provisional Measure Zone (PMZ) and Korea's west areas (non-PMZ) within the Yellow Sea. Spatial and temporal differences in the diversity and dominant species of fish assemblages were found between the PMZ and non-PMZ areas between the seasons. The mean δC values of fish assemblages were relatively higher in the non-PMZ areas than in the PMZ areas.

Trophic response of fishes to rainfall variability in a temperate estuarine system of Korea: A stable isotope approach.

To assess the basal resources supporting food webs impacted by rainfalls, we compared stable isotope ratios (δC and δN) of fish consumers and organic matter sources between up- and down-sites in an estuary between seasons (June and September) and years (2018 and 2019) that showed different patterns of summer monsoon. Our study showed seasonal differences in the δC and δN values of basal resources and fish consumers in both years. At the up-site, significant differences of δC values of fish consumers were found between years, resulting from changing rainfall period, thereby causing a shift in food availability from terrigenous organic matter to periphyton.

Development of a Quantitative PCR Assay for Four Salmon Species Inhabiting the Yangyangnamdae River Using Environmental DNA.

A species-specific quantitative PCR (qPCR) assay using environmental DNA (eDNA) is a promising tool for both qualitative and quantitative analyses of target species directly from water samples. Despite its reliability, an eDNA-based qPCR assay pipeline has not yet developed to monitor salmon species inhabiting Korean waters, which have been rapidly decreasing. We designed species-specific primers for four species inhabiting the eastern coastal waters along the Korean Peninsula.

Shifting resource utilization of the lacustrine shrimp Palaemon paucidens in temperate coastal lagoons of Korea as revealed by stable isotopes.

The spatial and seasonal variations in resource use of the lacustrine shrimp Palaemon paucidens were investigated in three different Korean lagoon systems in June and October 2018 by measuring their carbon and nitrogen stable isotope ratios. P. paucidens had much higher δC values at the permanently open lagoon (PL) as compared to the intermittently open lagoons (ILs), revealing a disparity in resource utilization.

Development of the cephalopod-specific universal primer set and its application for the metabarcoding analysis of planktonic cephalopods in Korean waters.

Although spatiotemporal analysis of the cephalopod larvae provides the useful information for the effective management of their resources, it has been difficult mainly due to their low numbers in the mixed zooplankton net samples and difficulty in morphological identification. In order to analyze the planktonic cephalopods using next-generation sequencing (NGS), we have designed a cephalopod-specific universal (CPD) primer set targeting a region covering mitochondrial cytochrome b and ND6 genes based on the currently identified 36 complete cephalopod mitochondrial genome sequences in the GenBank database. The expected amplicon sizes by CPD primers were between 465 and 471 bp, which was applicable to the MiSeq system (Illumina, San Diego, CA, USA).

Concentrations and Risk Assessment of Heavy Metals in Tissues of Walleye Pollock () Captured from the Northeastern Coast of Korea.

All heavy metals, except Hg, were well accumulated in liver compared with muscle and gonads. Estimated daily intakes of heavy metals were within 2% of the provisional maximum tolerable daily intakes, Hazard quotients of heavy metals were less than 1.0.

Characterization of complete mitochondrial genome of two-spot swimming crab (Miers, 1886).

The two-spot swimming crab (Miers, 1886) is an important decapod species in the benthic ecosystem of Korean waters. In this study, we determined its complete mitochondrial genome by the combination of NGS analysis using MiSeq platform and PCR-based cloning method. The circular mitochondrial genome of was 15,714 bp in length in which the standard set of 13 protein-coding genes, 22 tRNA genes, and 2 rRNA genes were encoded.

Molecular characterization of an adiponectin receptor homolog in the white leg shrimp, Litopenaeus vannamei.

Adiponectin (AdipoQ) and its receptors (AdipoRs) are strongly related to growth and development of skeletal muscle, as well as glucose and lipid metabolism in vertebrates. Herein we report the identification of the first full-length cDNA encoding an AdipoR homolog (Liv-AdipoR) from the decapod crustacean Litopenaeus vannamei using a combination of next generation sequencing (NGS) technology and bioinformatics analysis. The full-length Liv-AdipoR (1,245 bp) encoded a protein that exhibited the canonical seven transmembrane domains (7TMs) and the inversed topology that characterize members of the progestin and adipoQ receptor (PAQR) family.

Caffeine induces behavioural sensitization and overexpression of cocaine-regulated and amphetamine-regulated transcript peptides in mice.

This study examined whether repeated administration of caffeine would induce behavioural sensitization and overexpression of cocaine-regulated and amphetamine-regulated transcript (CART) peptides in mice. The involvement of dopaminergic receptors and adenosine receptors in caffeine-induced behavioural sensitization and CART overexpression was studied. The relevance of D₁R and D₂R, and A₁R and A(2A)R in the overexpression of CART peptides in mouse striatum was also evaluated.

3,4,5-Trimethoxycinnamic acid (TMCA), one of the constituents of Polygalae Radix enhances pentobarbital-induced sleeping behaviors via GABAAergic systems in mice.

These experiments were performed to investigate whether 3,4,5-trimethoxycinnamic acid (TMCA), one of the constituents derived from Polygalae Radix, enhances pentobarbital-induced sleeping behaviors, and to alter sleep architecture through the γ-aminobutyric acid (GABA)ergic systems in mice. TMCA decreased the locomotor activity. TMCA prolonged total sleep time, and reduced sleep latency induced by pentobarbital, similar to muscimol, a GABAA agonist.

Repeated Administration of Korea Red Ginseng Extract Increases Non-Rapid Eye Movement Sleep via GABAAergic Systems.

The current inquiry was conducted to assess the change in sleep architecture after long periods of administration to determine whether ginseng can be used in the therapy of sleeplessness. Following post-surgical recovery, red ginseng extract (RGE, 200 mg/ kg) was orally administrated to rats for 9 d. Data were gathered on the 1st, 5th, and 9th day, and an electroencephalogram was recorded 24 h after RGE administration.

Cordycepin Increases Nonrapid Eye Movement Sleep via Adenosine Receptors in Rats.

Cordycepin (3'-deoxyadenosine) is a naturally occurring adenosine analogue and one of the bioactive constituents isolated from Cordyceps militaris/Cordyceps sinensis, species of the fungal genus Cordyceps. It has traditionally been a prized Chinese folk medicine for the human well-being. Because of similarity of chemical structure of adenosine, cordycepin has been focused on the diverse effects of the central nervous systems (CNSs), like sleep regulation.

ESM-1 regulates cell growth and metastatic process through activation of NF-κB in colorectal cancer.

In our previous study, we reported that endothelial cell specific molecule-1 (ESM-1) was increased in tissue and serum from colorectal cancer patients and suggested that ESM-1 can be used as a potential serum marker for early detection of colorectal cancer. The aim of this study was to evaluate the role of ESM-1 as an intracellular molecule in colorectal cancer. ESM-1 expression was knocked down by small interfering RNA (siRNA) in colorectal cancer cells.

Dysregulation of overexpressed IL-32α in hepatocellular carcinoma suppresses cell growth and induces apoptosis through inactivation of NF-κB and Bcl-2.

IL-32 is a newly discovered cytokine. Recently, various reports suggest that it plays a role as a proinflammatory mediator and may be involved in several cancer carcinogenesis. However, IL-32 expression in hepatocellular carcinoma (HCC) remains unclear.

Development of a fluorescent microsphere immunoassay for cystatin B (CSTB) in serum of patients with hepatocellular carcinoma.

Background: Serum cystatin B (CSTB) concentrations have been reported to be increased in patients with hepatocellular carcinoma compared to concentrations seen in normal subjects. In this study, we developed a "fluorescent microsphere immunoassay" (FMI) capable of specifically detecting CSTB in serum.

Methods: The FMI used a microparticle conjugated polyclonal antibody to CSTB and biotinylated monoclonal antibody as capture protein and probe protein, respectively.

ESM-1 silencing decreased cell survival, migration, and invasion and modulated cell cycle progression in hepatocellular carcinoma.

Endothelial cell-specific molecule-1 (ESM-1) is a secretory proteoglycan comprising a mature polypeptide of 165 amino acids and a single dermatan sulfate. The aim of this study was to evaluate endothelial cell-specific molecule-1 (ESM-1) as a hepatocellular carcinoma (HCC) marker and to analyze the effect of ESM-1 gene silencing in hepatocellular carcinoma cells. RT-PCR and Western Blot analysis revealed overexpression of ESM-1 in human HCC liver tissue and in serum from patients with HCC.

Identification of endothelial cell-specific molecule-1 as a potential serum marker for colorectal cancer.

No ideal serum markers for screening colorectal cancer (CRC) have been identified. The aim of this study was to determine the usefulness of endothelial cell-specific molecule-1 (ESM-1) as a serum marker for CRC. Illumina microarray was carried out to search CRC-related biomarkers.

Evaluation of annexin II as a potential serum marker for hepatocellular carcinoma using a developed sandwich ELISA method.

Annexin II (Annexin A2, ANXA2) is a 36 kDa calcium-dependent phospholipid-binding protein that is located on the surface of most eukaryotic cells. ANXA2 is involved in several biological processes, including anti-inflammatory effects, Ca27+-dependent exocytosis, immune responses, Ca2+ transport and phospholipase A2 regulation. In our previous study, ANXA2 was identified as an up-regulated gene in hepatocellular carcinoma (HCC) tissue by cDNA microarray.

A micro-thermoelectric gas sensor for detection of hydrogen and atomic oxygen.

This paper demonstrates the fabrication and performance of a micro-thermoelectric gas sensor for an effective and inexpensive gas analysis system. The proposed micro-thermoelectric gas sensor was fabricated by using a surface micromachining technique. The sensing mechanism, consisting of thermoelectric material and a novel metal catalyst, was fabricated on the highly thermally resistive layer for reduced heat transfer to the substrate allowing for a simple fabrication process.

Temporal variation of chlorophyll a concentration in the coastal waters affected by the Hebei Spirit oil spill in the West Sea of Korea.

Time series changes in chlorophyll a concentration before and after the Hebei Spirit oil spill that occurred in December 2007 were analyzed using NCEP wind and SeaWiFS/MODIS ocean color data. Prevailing southwesterly winds and northeast/southwestward tidal currents pushed the oil towards Korea's West Sea coast of Taean. After the oil spill, daily chlorophyll a concentration decreased about 45-50% compared to the normal condition before the oil spill, and this decrease continued for about two weeks.