Publications by authors named "Chubin Luo"

Background And Aims: Hepatocellular carcinoma (HCC) recurrence is a major factor limiting long-time survival and the cause of most deaths in patients with HCC. However, molecular characterisation and potential therapeutic targets of recurrent HCC remain mostly unknown.

Approach And Results: We performed whole-exome sequencing (WES) in 63 matched primary and recurrent HCC tumours and combined the data with whole-genome sequencing (WGS) results in 43 paired samples from our previous study.

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Article Synopsis
  • - Intrahepatic cholangiocarcinoma (ICC) is the second most common liver cancer, with a poor prognosis and few treatment options, especially among Chinese patients whose genomic features are not well understood.
  • - This study analyzes the whole-exome sequencing of 204 ICC samples from Chinese patients, identifying six mutational signatures, including those linked to known harmful substances, and 13 significantly mutated genes such as SAV1.
  • - Researchers found that mutations in the SAV1 gene are linked to lower protein levels, increased tumor recurrence, and shorter patient survival, suggesting it plays a tumor-suppressor role that impacts cancer progression through Hippo signaling pathways.
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Backgrounds/aims: Intrahepatic cholangiocarcinoma (ICC) is a highly desmoplastic tumor with poor prognosis even after curative resection. We investigated the associations between the composition of the ICC stroma and immune cell infiltration and aimed to develop a stromal-immune signature to predict prognosis in surgically treated ICC.

Methods: We recruited 359 ICC patients and performed immunohistochemistry to detect α-smooth muscle actin (α-SMA), CD3, CD4, CD8, Foxp3, CD68, and CD66b.

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Background: The tumor microbiome has been characterized in several malignancies; however, no previous studies have investigated its role in intrahepatic cholangiocarcinoma (ICC). Hence, we explored the tumor microbiome and its association with prognosis in ICC.

Methods: One hundred and twenty-one ICC tumor samples and 89 adjacent normal tissues were profiled by 16S rRNA sequencing.

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Background: Accumulating evidence indicates that tumor heterogeneity is characterized by distinct immunosubtypes. However, prior studies have mainly focused on the functions of T cells. The role of tumor-infiltrating B cells in the microenvironment of hepatocellular carcinoma (HCC) requires further investigation.

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Background And Aims: Macrophages are prominent components of solid tumors and exhibit distinct functions in different tumor microenvironments. Exosomes are emerging as necessary mediators of the cross-talk between tumor cells and the microenvironment. However, the underlying mechanisms of exosomes involving into crosstalk between tumor cells and macrophages during disease progression of intrahepatic cholangiocarcinoma (ICC) have not been yet fully realized.

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  • * Researchers identified two types of tumor recurrence: de novo recurrence, which arises independently from the primary tumor, and ancestral recurrence, which is genetically linked to the primary tumor and progresses faster.
  • * The study found that the location of recurrence influences the pattern observed, with specific mutations pointing towards potential new therapeutic targets, such as BCL9, which may help improve survival outcomes for HCC patients.
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  • KRAS variants, particularly certain subtypes, are linked to the progression and poorer survival outcomes in patients with intrahepatic cholangiocarcinoma (ICC) after surgical treatment.
  • A study conducted on 1024 ICC patients identified 14 subtypes of KRAS variants, with G12D being the most common, occurring in 43.3% of the cases with KRAS mutations.
  • The results showed that patients with KRAS variants had higher levels of specific tumor markers, and the G12 variants were specifically associated with worse overall survival compared to patients without KRAS mutations.
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  • Intrahepatic cholangiocarcinoma (ICC) is a highly aggressive cancer with a tendency to relapse after surgery, making long-term survival rates low and highlighting the need for more understanding of its genomic changes during relapse.
  • Researchers performed whole-exome sequencing on paired primary and relapsed tumors from patients to identify genetic alterations and analyze how these changes affect tumor behavior and growth, particularly focusing on a gene called SLIT2.
  • The study found that relapsed tumors often developed new mutations while retaining key drivers, and specific mutations in SLIT2 were linked to tumor progression and immune cell interactions, suggesting that SLIT2 plays a significant role in ICC's aggressive nature and metastatic potential.
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Sarcomatoid hepatocellular carcinoma (sHCC) is a rare type of liver malignancy. Currently, the tumor immune features of sHCC are poorly understood. We recruited 31 patients with resected sHCC for whom tissue samples and complete clinicopathologic and follow-up data were available.

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Background: Long noncoding RNAs (lncRNAs) are functionally associated with cancer development and progression. Although gene copy number variation (CNV) is common in hepatocellular carcinoma (HCC), it is not known how CNV in lncRNAs affects HCC progression and recurrence. We aimed to identify a CNV-related lncRNA involved in HCC progression and recurrence and illustrate its underlying mechanisms and prognostic value.

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Background: Tumor-associated neutrophils (TANs) and macrophages (TAMs) can each influence cancer growth and metastasis, but their combined effects in intrahepatic cholangiocarcinoma (ICC) remain unclear.

Methods: We explored the distributions of TANs and TAMs in patient-derived ICC samples by multiplex immunofluorescent staining and tested their separate and combined effects on ICC in vitro and in vivo. We then investigated the mechanistic basis of the effects using PCR array, western blot analysis and ELISA experiments.

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Background: Plasmacytoid dendritic cells (pDCs) are present in various primary and metastatic human neoplasms; however, their clinical significance in intrahepatic cholangiocarcinoma is not clear.

Methods: To evaluate pDCs' distributions in and around tumors as well as their potential function and predictive value for prognosis in patients undergoing curative resection, we performed immunohistochemistry to examine the expression of pDC marker BDCA2, and CD3, CD4, CD8 and Foxp3 in intratumoral and peritumoral tissues from 359 patients with intrahepatic cholangiocarcinoma and compared with prognostic and clinicopathologic factors.

Results: Results showed that patients with high numbers of BDCA2 pDCs in peritumoral tissues were more likely to have elevated levels of carbohydrate antigen 19-9 and gamma-glutamyl transferase, larger and more tumors, advanced tumor-node-metastasis staging, more vascular/bile duct invasion, and lymphatic metastasis in association with greater chance of recurrence and shorter overall survival.

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Recent studies suggested that the immune microenvironment and mutational landscape are associated with the response to immune-based therapy in several types of cancer. The roles of those factors in Chinese HCC remain largely unknown. In this study, we obtained 182 FFPE samples of HCC cohort that were previously subjected to NGS (49 WGS, 18 WES, and 115 targeted sequencing).

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Structural variations (SVs) influence the development and progression of multiple types of cancer. The genes affected by SVs in hepatocellular carcinoma (HCC) and their contribution to tumor growth and metastasis remain unknown. In this study, through whole-genome sequencing (WGS), we identified as the gene most frequently affected by SVs, which were associated with low MACROD2 expression levels.

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Background And Aims: There is growing evidence that single-stranded, circular RNA (circRNA) plays a key role in the development of certain cancers, including hepatocellular carcinoma (HCC). It is less clear, however, what role circRNA plays in HCC metastasis.

Approach And Results: In this study, through circRNA sequencing, we identified a circRNA: circASAP1 (a circRNA derived from exons 2 and 3 of the ASAP1 gene, hsa_circ_0085616), which is associated with pulmonary metastasis after curative resection in patients with HCC.

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Background: Prognosis of hepatocellular carcinoma (HCC) remains poor despite significant recent improvement in therapy. Recent studies have reported that transglutaminase 3 (TGM3) plays an important role in several human cancer types. However, the role of TGM3 in HCC have not been previously elucidated.

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Article Synopsis
  • The study investigates the genetic factors that contribute to the early recurrence of hepatocellular carcinoma (HCC) in Chinese patients after surgical removal of the tumor, using various sequencing techniques on 182 primary HCC samples.
  • Researchers identified five genes, including WNK2, with mutations linked to early tumor recurrence, and found that alterations in WNK2 were associated with lower protein levels and poorer survival outcomes.
  • The findings suggest that WNK2 has a tumor-suppressor function, and its inactivation promotes HCC growth and metastasis, highlighting its potential role in early recurrence of the disease.
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Plasmacytoid dendritic cells (pDCs) are present in various primary and metastatic human neoplasms; however, their clinical significance in hepatocellular carcinoma (HCC) is unclear. In this study, we investigated the distribution, prognostic value, and potential function of pDCs in HCC patients undergoing curative resection. We performed immunohistochemical analyses of whole tumor sections from 224 patients to assess the expression of BDCA2, CD3, CD4, CD8, Foxp3, granzyme B, IL-17, and CD34.

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Tumor-associated neutrophils (TANs) play a crucial role in tumor development and progression in the cancer microenvironment. Despite increased understanding of TAN contributions to hepatocellular carcinoma (HCC) progression and prognosis, the direct interaction between TANs and HCC cells is not fully understood. In this study, we tested the effect of TANs on HCC cells in vitro and in vivo and investigated the mechanism of interaction between them.

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Increasing numbers of evidences have demonstrated that microRNAs (miRNAs) are implicated in metastasis and progression of hepatocellular carcinoma (HCC). However, their detailed expression levels and actual functions in HCCs have not been fully clarified yet. Results from our recent study revealed that some miRNAs were particularly related to metastasis of HCCs.

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Background: Hepatocellular carcinoma (HCC) ranks as the third leading cause of cancer-related mortality in China with increasing incidence. This study is designed to explore early genetic changes implicated in HCC tumorigenesis and progression by whole-exome sequencing.

Methods: We firstly sequenced the whole exomes of 5 paired hepatitis B virus-related early-stage HCC and peripheral blood samples, followed by gene ontological analysis and pathway analysis of the single-nucleotide variants discovered.

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Aim: The MAGE family member H1 (MAGEH1) belongs to melanoma-associated antigen (MAGE) superfamily. The role of MAGEH1 in hepatocellular carcinoma (HCC) is largely undefined.

Materials & Methods: We used quantitative reverse transcription PCR and immunohistochemistry to detect MAGEH1 expression in HCC tissues.

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