Publications by authors named "Chuan He"

Purpose: Rheumatoid arthritis (RA) is a chronic inflammatory autoimmune disease influenced by environmental triggers, including the commensal microbiota. Recent research has highlighted distinctive features of the gut microbiota in RA patients. This study investigates the therapeutic potential of berberine (BBR), a gut microbiota modulator known for its significant anti-RA effects, and elucidates the underlying mechanisms.

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Here, we show that vitamin E succinate (VES) acts as a degrader for the mA RNA demethylase fat mass and obesity-associated protein (FTO), thus suppressing tumor growth and resistance to immunotherapy. FTO is ubiquitinated by its E3 ligase DTX2, followed by UFD1 recruitment and subsequent degradation in the proteasome. VES binds to FTO and DTX2, leading to enhanced FTO-DTX2 interaction, FTO ubiquitination, and degradation in FTO-dependent tumor cells.

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The vast potential of medical big data to enhance healthcare outcomes remains underutilized due to privacy concerns, which restrict cross-center data sharing and the construction of diverse, large-scale datasets. To address this challenge, we developed a deep generative model aimed at synthesizing medical data to overcome data sharing barriers, with a focus on breast ultrasound (US) image synthesis. Specifically, we introduce CoLDiT, a conditional latent diffusion model with a transformer backbone, to generate US images of breast lesions across various Breast Imaging Reporting and Data System (BI-RADS) categories.

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  • The study investigates the role of 5-hydroxymethylcytosines (5hmC) in the progression of gastric premalignant lesions to gastric adenocarcinoma (GAC) in a large cohort of Chinese patients, with data collected over 12.2 years.
  • Researchers conducted a genome-wide mapping of 5hmC that revealed 213 differentially modified gene bodies tied to important biological pathways like cell division, metabolism, and tumorigenesis.
  • A predictive model based on 5hmC demonstrated strong potential for assessing cancer progression risk, achieving an 87.5% accuracy in validation samples, marking a significant advance in understanding gastric cancer development.
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  • Selecting the right genes to identify different cell types is crucial in single-cell sequencing analysis, but existing methods often lead to redundancy and lack specificity in gene expression patterns.* -
  • CosGeneGate is a new model that improves the selection of marker genes by focusing on both the accuracy of cell-type classification and the unique expression patterns of the genes.* -
  • Tests show that CosGeneGate identifies better-performing non-redundant marker genes across major human cell types and tissues, with results available on their GitHub page.*
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Small nucleolar RNAs (snoRNAs) are non-coding RNAs known for guiding RNA modifications, including 2'-O-methylation (N) and pseudouridine (Ψ). While snoRNAs may also interact with other RNAs, such as mRNA, the full repertoire of RNAs targeted by snoRNA remains elusive due to the lack of effective technologies that identify snoRNA targets transcriptome wide. Here, we develop a chemical crosslinking-based approach that comprehensively detects cellular RNA targets of snoRNAs, yielding thousands of previously unrecognized snoRNA-mRNA interactions in human cells and mouse brain tissues.

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Background: The aim of this prospective randomized clinical study was to compare the clinical and second-look arthroscopic outcomes of early weight-bearing and delayed weight-bearing rehabilitation protocols following anterior cruciate ligament (ACL) reconstruction with hamstring tendons.

Methods: This prospective study involved 90 patients who underwent ACL reconstruction with hamstring tendons. The patients were randomly assigned to either perform weight-bearing exercises at three weeks postoperatively (group A) or at one week postoperatively (group B).

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Enhancing the effectiveness of utilizing circulating cell-free DNA (cfDNA) for disease screening remains a challenge, necessitating improved sensitivity, specificity, cost-efficiency, and patient adherence. We present here LAMP-MS, an innovative technology that integrates linear amplification with single-base quantitative nucleic acid mass spectrometry on silicon chips. This approach overcomes several limitations in utilizing cfDNA 5-methylcytosine (5 mC) status for colorectal cancer (CRC) screening.

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A highly efficient rhodium-catalyzed asymmetric hydrosilylation of aldehydes, ketones, and α,β-unsaturated ketones with dihydrosilanes is developed, that allows the rapid assembly of a variety of Si-stereogenic alkoxysilanes and silyl enol ethers in good yields and enantioselectivities under mild conditions. The applicability of this methodology was demonstrated by a series of stereospecific transformations to construct diverse Si-stereogenic derivatives.

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Quiescence acquisition of proliferating neural stem cells (NSCs) is required to establish the adult NSC pool. The underlying molecular mechanisms are not well understood. Here, we showed that conditional deletion of the mA reader Ythdf2, which promotes mRNA decay, in proliferating NSCs in the early postnatal mouse hippocampus elevated quiescence acquisition in a cell-autonomous fashion with decreased neurogenesis.

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Background: Rapid on-site evaluation (ROSE) plays an important role during transbronchial sampling, providing an intraoperative cytopathologic evaluation. However, the shortage of cytopathologists limits its wide application. This study aims to develop a deep learning model to automatically analyze ROSE cytological images.

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  • A phase 3 trial compared the effectiveness and safety of zuberitamab combined with CHOP chemotherapy (Hi-CHOP) against rituximab combined with CHOP (R-CHOP) in patients with untreated CD20-positive diffuse large B-cell lymphoma (DLBCL).
  • The trial involved 487 patients, with a primary focus on the objective response rate (ORR) after six treatment cycles, finding that Hi-CHOP achieved a similar ORR to R-CHOP while demonstrating a significantly higher complete response (CR) rate in some analyses.
  • Long-term follow-up indicated that Hi-CHOP patients experienced improved duration of response (DOR), progression-free survival (PFS), and overall survival
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Background: Sigmoid Ventricular Septum (SVS) is a type of hypertrophic cardiomyopathy characterized by a reduced angle between the basal interventricular septum and the ascending aorta, and SVS can lead to dynamic Left Ventricular Outflow Tract obstruction (LVOTO) during hypercontractile states. Patients experiencing LVOTO may manifest symptoms such as angina, syncope, etc. Radiofrequency ablation (RFA) has been utilized to treat patients with hypertrophic obstructive cardiomyopathy, but there is no reports on its use in treating LVOTO resulting from SVS.

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  • The study identified potential biomarkers in cell-free DNA (cfDNA) marked by 5-hydroxymethylcytosine (5hmC) that can detect colorectal cancer (CRC) up to 36 months prior to clinical diagnosis using samples from the PLCO Cancer Screening Trial.
  • Research utilized 5hmC-seal assays and machine learning on cfDNA from 201 CRC cases and 401 controls, producing a predictive detection model with promising accuracy (AUC values around 77% in training and 73% in validation sets), outperforming traditional risk factor assessments.
  • The 5hmC biomarkers hold potential for a minimally invasive test to enhance early CRC detection, thereby improving patient
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  • The presence of latently infected CD4 T cells remains a challenge to curing HIV-1, even with effective antiretroviral therapy.
  • Research shows that the mA modification of RNA plays a crucial role in regulating HIV-1 infection, affecting viral stability and immune response.
  • In a study using a model of HIV-1 latency, an increase in mA levels was observed during reactivation, highlighting its potential importance in overcoming HIV-1 latency.
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  • Subjective cognitive decline (SCD) is recognized as the early stage of Alzheimer's, but research on brain changes during this stage is not consistent.
  • A study examined 37 SCD patients, 28 with mild cognitive impairment (MCI), and 42 healthy controls to identify structural brain differences using MRI and neuropsychological tests.
  • Results indicated that both SCD and MCI had reduced volume in a specific brain region, but SCD also exhibited unique structural changes in several areas, and classification models successfully distinguished the groups with over 70% accuracy.
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  • - TET2 gene mutations lead to myeloid malignancies by causing an open chromatin state, activating stem cell self-renewal genes, and disrupting normal DNA methylation processes.
  • - The study highlights how TET2 interacts with chromatin-associated retrotransposon RNA 5-methylcytosine (mC) and the protein MBD6 to control histone modifications that influence chromatin structure.
  • - Depleting MBD6 in TET2-deficient cells can block malignant cell proliferation and reverse some of the harmful effects of TET2 loss, indicating a potential target for therapies aimed at TET2 mutation-related cancers.
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  • The study finds that the YTHDF1 protein, which reads N6-methyladenosine on RNA, plays a crucial role in cancer progression and is upregulated in dendritic cells (DCs) after radiotherapy (RT).
  • High levels of YTHDF1 in DCs are linked to worse patient outcomes during RT, while removing or inhibiting YTHDF1 boosts the effectiveness of radiation therapy in cancer models.
  • The research uncovers a regulatory mechanism between YTHDF1 and the STING signaling pathway, suggesting that targeting YTHDF1 could improve cancer treatment strategies such as RT and radioimmunotherapy.
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  • * Recent studies indicate that mA influences β-cell function after birth and is linked to diabetes, but its specific mechanisms in pancreas development are not fully understood.
  • * This research reveals that mA levels change during human pancreas development and highlights the importance of METTL14, a protein involved in adding mA, for the early differentiation of pancreatic cells in both species.
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Co-infection with diverse bacteria is commonly seen in patients infected with the novel coronavirus, SARS-CoV-2. This type of co-infection significantly impacts the occurrence and development of novel coronavirus infection. Bacterial co-pathogens are typically identified in the respiratory system and blood culture, which complicates the diagnosis, treatment, and prognosis of COVID-19, and even exacerbates the severity of disease symptoms and increases mortality rates.

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