Using DNA metabarcoding to characterize national scale diatom-environment relationships and to develop indicators in streams and rivers of the United States.

Recent advancements in DNA techniques, metabarcoding, and bioinformatics could help expand the use of benthic diatoms in monitoring and assessment programs by providing relatively quick and increasingly cost-effective ways to quantify diatom diversity in environmental samples. However, such applications of DNA-based approaches are relatively new, and in the United States, unknowns regarding their applications at large scales exist because only a few small-scale studies have been done. Here, we present results from the first nationwide survey to use DNA metabarcoding (rbcL) of benthic diatoms, which were collected from 1788 streams and rivers across nine ecoregions spanning the conterminous USA.

Using Single-Species and Whole Community Stream Mesocosm Exposures for Identifying Major Ion Effects in Doses Mimicking Resource Extraction Wastewaters.

Wastewaters and leachates from various inland resource extraction activities contain high ionic concentrations and differ in ionic composition, which complicates the understanding and effective management of their relative risks to stream ecosystems. To this end, we conducted a stream mesocosm dose-response experiment using two dosing recipes prepared from industrial salts. One recipe was designed to generally reflect the major ion composition of deep well brines (DWB) produced from gas wells (primarily Na, Ca, and Cl) and the other, the major ion composition of mountaintop mining (MTM) leachates from coal extraction operations (using salts dissociating to Ca, Mg, Na, SO and HCO)-both sources being extensive in the Central Appalachians of the USA.

Nutrient Removal Potential of Headwater Wetlands in Coastal Plains of Alabama, USA.

Headwater streams drain over 70% of the land in the United States with headwater wetlands covering 6.59 million hectares. These ecosystems are important landscape features in the southeast United States, with underlying effects on ecosystem health, water yield, nutrient cycling, biodiversity, and water quality.

Effectiveness of Design and Implementation Alternatives for Stormwater Control Measures Modeled at the Watershed Scale.

To evaluate the effectiveness of dispersed stormwater control measures (SCMs), it is important to consider groundwater-surface water interactions and their consequences for stream hydrologic responses relevant to channel geomorphic stability and ecology. This study aimed to evaluate the effectiveness of different SCM design scenarios and implementation alternatives on exceedance levels and volumes of streamflow at the watershed scale. For this purpose, a process-based block-connector model of Sligo Creek, an urban watershed (29 km) in the suburbs of Washington, DC, was used to study the effects of SCM system design on the stream hydrograph.

Understanding the effects of phosphorus on diatom richness in rivers and streams using taxon-environment relationships.

Changes in phosphorus concentrations affect periphytic diatom composition in streams, yet we rarely observe strong relationships between diatom richness and phosphorus. In contrast, changes in conductivity are strongly associated with differences in both diatom composition and richness. We hypothesised that we could better understand the mechanisms that control the phosphorus-richness relationship by examining relationships between phosphorus and the occurrence of individual diatom taxa, comparing these with relationships between conductivity and taxon occurrence, and documenting how niche breadths of taxa affect richness patterns.

Decreasing trends in total suspended solids and cumulative effects of nonpoint source projects in the Cuyahoga River Watershed, OH.

Using the US EPA's Grants Reporting and Tracking System (GRTS), we test if completion of best management practices (BMPs) through the Clean Water Act Section (§)319 National Nonpoint Source Program was associated with a decreasing trend in total suspended solids (TSS) load (metric tons/year). The study area chosen had 21 completed projects in the Cuyahoga River watershed in northeastern Ohio from 2000 to 2018. The §319 projects ranged from dam removal, floodplain/wetland restoration to stormwater projects.

Developing Indicators of Nutrient Pollution in Streams Using 16S rRNA Gene Metabarcoding of Periphyton-Associated Bacteria.

Indicators based on nutrient-biota relationships in streams can inform water quality restoration and protection programs. Bacterial assemblages could be particularly useful indicators of nutrient effects because they are species-rich, important contributors to ecosystem processes in streams, and responsive to rapidly changing conditions. Here, we sampled 25 streams weekly (12-14 times each) and used 16S rRNA gene metabarcoding of periphyton-associated bacteria to quantify the effects of total phosphorus (TP) and total nitrogen (TN).

Quantifying spatial and temporal relationships between diatoms and nutrients in streams strengthens evidence of nutrient effects from monitoring data.

Observational data are frequently used to better understand the effects of changes in P and N on stream biota, but nutrient gradients in streams are usually associated with gradients in other environmental factors, a phenomenon that complicates efforts to accurately estimate the effects of nutrients. Here, we propose a new approach for analyzing observational data in which we compare the effects of changes in nutrient concentrations in time within individual sites and in space among many sites. Covarying relationships between other, potentially confounding environmental factors and nutrient concentrations are unlikely to be the same in both time and space, and, therefore, estimated effects of nutrients that are similar in time and space are more likely to be accurate.

Linking Water Quality to Drinking Water Treatment Costs Using Time Series Analysis: Examining the Effect of a Treatment Plant Upgrade in Ohio.

We estimate a cost function for a water treatment plant in Ohio to assess the avoided-treatment costs resulting from improved source water quality. Regulations and source water concerns motivated the treatment plant to upgrade its treatment process by adding a granular activated carbon building in 2012. The cost function uses daily observations from 2013 to 2016; this allows us to compare the results to a cost function estimated for 2007-2011 for the same plant.

Development of a Risk Characterization Tool for Harmful Cyanobacteria Blooms on the Ohio River.

A data-driven approach to characterizing the risk of cyanobacteria-based harmful algal blooms (cyanoHABs) was undertaken for the Ohio River. Twenty-five years of river discharge data were used to develop Bayesian regression models that are currently applicable to 20 sites spread-out along the entire 1579 km of the river's length. Two site-level prediction models were developed based on the antecedent flow conditions of the two blooms that occurred on the river in 2015 and 2019: one predicts if the current year will have a bloom (the occurrence model), and another predicts bloom persistence (the persistence model).

Characterizing temporal variability in streams supports nutrient indicator development using diatom and bacterial DNA metabarcoding.

Interest in developing periphytic diatom and bacterial indicators of nutrient effects continues to grow in support of the assessment and management of stream ecosystems and their watersheds. However, temporal variability could confound relationships between indicators and nutrients, subsequently affecting assessment outcomes. To document how temporal variability affects measures of diatom and bacterial assemblages obtained from DNA metabarcoding, we conducted weekly periphyton and nutrient sampling from July to October 2016 in 25 streams in a 1293 km mixed land use watershed.

Reliability theory for microbial water quality and sustainability assessment.

Microbial surface water contamination can disrupt critical ecosystem services such as recreation and drinking water supply. Prediction of water contamination and assessment of sustainability of water resources in the context of water quality are needed but are difficult to achieve - with challenges arising from the complexity of environmental systems, and stochastic variability of processes that drive contaminant fate and transport. In this paper we use reliability theory as a framework to address these issues.

Increasingly severe cyanobacterial blooms and deep water hypoxia coincide with warming water temperatures in reservoirs.

Cyanobacterial blooms are expected to intensify and become more widespread with climate change and sustained nutrient pollution, subsequently increasing threats to lentic ecosystems, water quality, and human health. However, little is known about their rates of change because long-term monitoring data are rare, except for some well-studied individual lakes, which typically are large and broadly dispersed geographically. Using monitoring data spanning 1987-2018 for 20 temperate reservoirs located in the USA, we found that cyanobacteria cell densities mostly posed low-to-moderate human health risks until 2003-2005, after which cell densities rapidly increased.

DNA metabarcoding effectively quantifies diatom responses to nutrients in streams.

Nutrient pollution from human activities remains a common problem facing stream ecosystems. Identifying ecological responses to phosphorus and nitrogen can inform decisions affecting the protection and management of streams and their watersheds. Diatoms are particularly useful because they are a highly diverse group of unicellular algae found in nearly all aquatic environments and are sensitive responders to increased nutrient concentrations.

Evidence of Genetic Fecal Marker Interactions between Water Column and Periphyton in Artificial Streams.

Periphyton is a complex mixture of algae, microbes, inorganic sediment, and organic matter that is attached to submerged surfaces in most flowing freshwater systems. This natural community is known to absorb pollutants from the water column, resulting in improved water quality. However, the role of periphyton in the fate and transport of genetic fecal markers suspended in the water column remains unclear.

Comparison of satellite reflectance algorithms for estimating turbidity and cyanobacterial concentrations in productive freshwaters using hyperspectral aircraft imagery and dense coincident surface observations.

We analyzed 37 satellite reflectance algorithms and 321 variants for five satellites for estimating turbidity in a freshwater inland lake in Ohio using coincident real hyperspectral aircraft imagery converted to relative reflectance and dense coincident surface observations. This study is part of an effort to develop simple proxies for turbidity and algal blooms and to evaluate their performance and portability between satellite imagers for regional operational turbidity and algal bloom monitoring. Turbidity algorithms were then applied to synthetic satellite images and compared to in situ measurements of turbidity, chlorophyll-a (Chl-a), total suspended solids (TSS) and phycocyanin as an indicator of cyanobacterial/blue green algal (BGA) abundance.

Performance of National Maps of Watershed Integrity at Watershed Scales.

Watershed integrity, the capacity of a watershed to support and maintain ecological processes essential to the sustainability of services provided to society, can be influenced by a range of landscape and in-stream factors. Ecological response data from four intensively monitored case study watersheds exhibiting a range of environmental conditions and landscape characteristics across the United States were used to evaluate the performance of a national level Index of Watershed Integrity (IWI) at regional and local watershed scales. Using Pearson's correlation coefficient (), and Spearman's rank correlation coefficient ( ), response variables displayed highly significant relationships and were significantly correlated with IWI and ICI (Index of Catchment Integrity) values at all watersheds.

IMPROVING PREDICTIVE MODELS OF IN-STREAM PHOSPHORUS CONCENTRATION BASED ON NATIONALLY-AVAILABLE SPATIAL DATA COVERAGES.

Spatial data are playing an increasingly important role in watershed science and management. Large investments have been made by government agencies to provide nationally-available spatial databases; however, their relevance and suitability for local watershed applications is largely unscrutinized. We investigated how goodness of fit and predictive accuracy of total phosphorus (TP) concentration models developed from nationally-available spatial data could be improved by including local watershed-specific data in the East Fork of the Little Miami River, Ohio, a 1290 km watershed.

Evaluating the portability of satellite derived chlorophyll-a algorithms for temperate inland lakes using airborne hyperspectral imagery and dense surface observations.

This study evaluated the performances of twenty-nine algorithms that use satellite-based spectral imager data to derive estimates of chlorophyll-a concentrations that, in turn, can be used as an indicator of the general status of algal cell densities and the potential for a harmful algal bloom (HAB). The performance assessment was based on making relative comparisons between two temperate inland lakes: Harsha Lake (7.99 km) in Southwest Ohio and Taylorsville Lake (11.

Reliability-Based Water Quality Assessment with Load Resistance Factor Design: Application to TMDL.

Effective load reduction strategies rely on an accurate Total Maximum Daily Load (TMDL) calculation, which quantifies contaminant loading from various sources. There is a wide range of methods to consider uncertainties in TMDLs: from simple, conservative assumptions regarding factors that contribute to the TMDL required margin of safety (MOS), to probability-based approaches such as Monte Carlo simulations, which explicitly quantifies TMDL uncertainty. In this paper the authors adapt the Load Resistance Factor Design (LRFD), a rigorous, reliability-based framework, to water quality assessment and the TMDL process.

Cumulative Effects of Low Impact Development on Watershed Hydrology in a Mixed Land-Cover System.

Low Impact Development (LID) is an alternative to conventional urban stormwater management practices, which aims at mitigating the impacts of urbanization on water quantity and quality. Plot and local scale studies provide evidence of LID effectiveness; however, little is known about the overall watershed scale influence of LID practices. This is particularly true in watersheds with a land cover that is more diverse than that of urban or suburban classifications alone.