Conformational States of the CXCR4 Inhibitor Peptide EPI-X4-A Theoretical Analysis.

EPI-X4, an endogenous peptide inhibitor, has exhibited potential as a blocker of CXCR4-a G protein-coupled receptor. This unique inhibitor demonstrates the ability to impede HIV-1 infection and halt CXCR4-dependent processes such as tumor cell migration and invagination. Despite its promising effects, a comprehensive understanding of the interaction between EPI-X4 and CXCR4 under natural conditions remains elusive due to experimental limitations.

Grand Canonical ReaxFF Molecular Dynamics Simulations for Catalytic Reactions.

In order to study the time-dependent behavior of catalytic systems during operation, we have developed a grand canonical molecular dynamics approach based on the ReaxFF reactive force-field framework. After describing the details of the implementation, the capabilities of this method are demonstrated by studying the gas-phase water formation from oxygen and hydrogen on platinum catalysts during the steady state where we discuss the effects of the surface structure as well as the importance of kinetics. The approach presented here can be extended to other dynamic (catalytic) systems, providing a framework for exploring catalytic and electrocatalytic processes, in particular, allowing studies on the effects of reaction conditions on a system's behavior, characteristics, and stability.