Shift a laser beam back and forth to exchange heat and work in thermodynamics.

Although the equivalence of heat and work has been unveiled since Joule's ingenious experiment in 1845, they rarely originate from the same source in experiments. In this study, we theoretically and experimentally demonstrated how to use a high-precision optical feedback trap to combine the generation of virtual temperature and potential to simultaneously manipulate the heat and work of a small system. This idea was applied to a microscopic Stirling engine consisting of a Brownian particle under a time-varying confining potential and temperature.

Fluctuation relations between hierarchical kinetically equivalent networks with Arrhenius-type transitions and their roles in systems and structural biology.

The legality of using simple kinetic schemes to determine the stochastic properties of a complex system depends on whether the fluctuations generated from hierarchical equivalent schemes are consistent with one another. To analyze this consistency, we perform lumping processes on the stochastic differential equations and the generalized fluctuation-dissipation theorem and apply them to networks with the frequently encountered Arrhenius-type transition rates. The explicit Langevin force derived from those networks enables us to calculate the state fluctuations caused by the intrinsic and extrinsic noises on the free energy surface and deduce their relations between kinetically equivalent networks.

Sorption behavior of polyaramides in relation to isolation of nucleic acids and proteins.

The effect of chemical composition and morphology of the surface layers of new polyaramide-containing sorbents on the mechanism of selective sorption of nucleic acids and proteins was investigated as compared to the previously studied sorbents modified with fluoropolymers and polyaniline (high-throughput materials providing one-step isolation of DNA from biological mixtures). A series of silica-based sorbents modified with polyaramides having consistently varying structure and containing the set of "key" structural elements (aromatic units and nitrogen atoms in the backbone, fluorinated groups), and various donor and acceptor moieties was prepared. The chemical composition of the polymer coatings was evaluated by X-ray photoelectron spectroscopy.

Stochastic lumping analysis for linear kinetics and its application to the fluctuation relations between hierarchical kinetic networks.

Conventional studies of biomolecular behaviors rely largely on the construction of kinetic schemes. Since the selection of these networks is not unique, a concern is raised whether and under which conditions hierarchical schemes can reveal the same experimentally measured fluctuating behaviors and unique fluctuation related physical properties. To clarify these questions, we introduce stochasticity into the traditional lumping analysis, generalize it from rate equations to chemical master equations and stochastic differential equations, and extract the fluctuation relations between kinetically and thermodynamically equivalent networks under intrinsic and extrinsic noises.

Localization-delocalization transition of the instantaneous normal modes of liquid water.

Despite the fact that the localization-delocalization transition (LDT) widely exists in wave systems, quantitative studies on its critical and multifractal properties are mainly focused on solids. In this work, these properties are investigated on the vibrational motions of liquid water. Simulations of up to 18000 molecules on the flexible extended simple point charge water model provide nearly 10(6) instantaneous normal modes.

Effect of coagulation mechanisms on the fouling and ultrasonic cleaning of PTFE membrane.

In this study, the effect of coagulation pretreatment on membrane fouling and ultrasonic cleaning efficiency was investigated using a dead-end polytetrafluoroethylene (PTFE) microfiltration system. The extent of membrane fouling was examined under different coagulation mechanisms such as charge neutralization (CN), electrostatic patch effect (EPE) and sweep flocculation (SW). Fouling through EPE mechanism provided the greatest flux decline and least permeate flux recovery over CN and SW.

Generalized path integral method for Elliott-Yafet spin relaxations in quantum wells and narrow wires.

We generalized the semiclassical path integral method originally used in the D'yakonov-Perel' mechanism to study the spin relaxation of the Elliott-Yafet mechanism in low-dimensional systems. In quantum wells, the spin properties calculated by this method confirmed the experimental results. In two-dimensional narrow wires, size and impurity effects on the Elliott-Yafet relaxation were predicted, including the wire-width-dependent relaxation time, the polarization evolution on the sample boundaries, and the relaxation behavior during the diffusive-ballistic transition.

A Markovian engine for a biological energy transducer: the catalytic wheel.

The molecular machines in biological cells are made of proteins, DNAs and other classes of molecules. The structures of these molecules are characteristically "soft", highly flexible, and yet their interactions with other molecules or ions are specific and selective. This chapter discusses a prevalent form, the catalytic wheel, or the energy transducer of cells, examines its mechanism of action, and extracts from it a set of simple but general rules for understanding the energetics of the biomolecular devices.

Intracellular delivery can be achieved by bombarding cells or tissues with accelerated molecules or bacteria without the need for carrier particles.

To deliver non-permeable molecules into cells, one can utilize protocols such as microinjection, electroporation, liposome-mediated transfection or virus-mediated transfection. However, each method has its own limitations. Here we have developed a new molecular delivery technique where live cells or tissues are bombarded with highly accelerated molecules directly and without the need to conjugate the molecules onto carrier particles, which is essential in conventional "gene gun" experiments.

Cell adhesion and related phenomena on the surface-modified Au-deposited nerve microelectrode examined by total impedance measurement and cell detachment tests.

This study investigated alkanethiolate self-assembled monolayers (SAMs) of varied chain lengths adsorbed upon novel Au-coated microelectrodes, of which the surface properties were quantitatively evaluated by surface characterization and 3T3 fibroblast cell adhesion, total impedance and cell detachment tests. Thin-film SAMs adsorbed upon Au/PI/Si provided a hydrophobic or passive surface with increased water contact angle and initial total impedance. From cell adhesion tests, we can observe that the film formed as a dense-packed spacer resulted in incomplete cell sealing of 3T3 cells upon the surface-modified microelectrode.

Rotary motor powered by stochastic uncorrelated dipoles.

It is demonstrated that the stochastic back-and-forth vibrations of uncorrelated dipoles may lead to rotation of their ambient dipoles. This peculiar phenomenon is clarified by considering spatial and temporal symmetry breakings. The former asymmetry is the result of the multiple biased Hamiltonian vector fields, which is a ratchet effect, and the latter, of the time sequence specified by a metastable state.

Effects of Ding-Chuan-Tang on bronchoconstriction and airway leucocyte infiltration in sensitized guinea pigs.

Ding-Chuan-Tang (DCT), a traditional Chinese medicine, has been used in treatment of the bronchial asthma for several centuries. However, the therapeutic mechanism of these Chinese medicine are still far from clear. To understand the mechanism of antiasthmatic property of DCT.

Stochastic resonance in a biological motor under complex fluctuations.

The dynamics division approach proposed in this work enables us to handle dynamical equations with complex fluctuations. A Brownian motor with cyclic conformational changes is analyzed to understand effects of noise on its signal transduction, and on condition in which stochastic resonance may take place. The result reproduces several features of the experimental data on the electric activation of ion pumping by Na, K-ATPase.

Transfer operator approach on three-dimensional quantum billiards with SO(2) symmetry.

This work demonstrates the application of Bogomolny's transfer operator method on three-dimensional dynamics. Motivated by experimental observations of lenslike metal clusters, the quantum billiards bounded by a flat bottom and an upper surface with SO(2) symmetry are studied. A precise determination of the energies with error less than 0.

Truncation and reset process on the dynamics of Parrondo's games.

The counter-intuitive feature of Parrondo's games is illustrated on various dynamical systems combined from different deterministic and stochastic subsystems. The concept of truncation and reset process is introduced, which provides a transparent perspective to understand the underlying mechanism of this class of dynamics, including the transport of flashing ratchets, and clarifies the puzzlement why random switching between two games can generate reversal dynamics as periodical switching does.

Ratchet models using driving forces generated by deterministic chaotic maps.

This study investigates how ratchets perform under driving forces generated by the circle, baker, and logistic maps with varying driving frequencies. The markedly different unidirectional net transports induced by distinct maps and frequencies are clarified by vector field analysis of the ratchet equations. Analysis results indicate that both the deterministic property of the driving forces and the asymmetric effect due to the ratchet potential impact the transport.