Publications by authors named "Cheng-Chieh Wu"

Phonon dynamics in organic-inorganic hybrid perovskites (OIHPs) exhibit inherent complexity driven by the intricate interactions between rotatable organic cations and dynamically disordered inorganic octahedra, mediated by hydrogen bonding. This study aims to address this complexity by investigating the thermal transport behavior of MAPbCl as a gateway to the OIHPs family. The results reveal that the ultralow thermal conductivity of MAPbCl arises from a synergistic interplay of exceptionally low phonon velocities, short phonon lifetimes, and phonon mean free paths approaching the Regel-Ioffe limit.

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Root architecture and function are critical for plants to secure water and nutrient supply from the soil, but environmental stresses alter root development. The phytohormone jasmonic acid (JA) regulates plant growth and responses to wounding and other stresses, but its role in root development for adaptation to environmental challenges had not been well investigated. We discovered a novel JA Upregulated Protein 1 gene (JAUP1) that has recently evolved in rice and is specific to modern rice accessions.

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Article Synopsis
  • * Research utilizing whole-genome sequencing and archaeological data reveals that japonica rice in the northern Philippines diverged from Indonesian landraces around 3,500 years ago, while Taiwanese rice shows complex origins involving admixture from both temperate and tropical japonica strains.
  • * The study indicates that the temperate japonica rice in Taiwan separated from northeast Asian populations about 2,600 years ago, and trade networks across the South China Sea enhanced gene flow from the northern Philippines, highlighting local adaptation
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  • Weedy rice, a problematic cousin of cultivated rice, has traits that impact rice production, and the study aims to analyze its genetic traits using data from the 3000 Rice Genome Project (3K-RGP).
  • Researchers selected 1378 rice individuals from different sub-populations for a genome-wide association analysis, focusing on traits like seed coat color and seed height, identifying 66 specific SNPs (genetic markers) linked to these traits.
  • The study found that the genetic basis for traits varies across sub-populations, and the allele frequency and traits showed significant differences when comparing data from weedy rice and normal rice genomes.
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Rice domestication/adaptation is a good model for studies of the development and spread of this important crop. Mutations that caused morphological and physiological change, followed by human selection/expansion, finally led to the improvement of phenotypes suitable for different kinds of environments. We used the sequence information for Heading date 1 (Hd1) gene to reveal the association between sequence changes and flowering phenotypes of rice in different regions.

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Background: Genetic data for traditional Taiwanese (Formosan) agriculture is essential for tracing the origins on the East Asian mainland of the Austronesian language family, whose homeland is generally placed in Taiwan. Three main models for the origins of the Taiwanese Neolithic have been proposed: origins in coastal north China (Shandong); in coastal central China (Yangtze Valley), and in coastal south China. A combination of linguistic and agricultural evidence helps resolve this controversial issue.

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This article was not made open access when initially published online, which was corrected before print publication. In addition, ORCID links were missing for 12 authors and have been added to the HTML and PDF versions of the article.

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  • The genus Oryza serves as an important model for studying molecular evolution, revealing rapid species diversification alongside the emergence of new genetic elements and minimal large-scale chromosomal changes.
  • The research clarifies the complex phylogenetic history of Oryza, particularly within the 'AA' subclade of domesticated species, highlighting cases of introgression and the presence of disease resistance genes.
  • This study significantly advances rice research by releasing a comprehensive long-read genome assembly of IR 8 'Miracle Rice,' which played a crucial role in addressing famine during the Green Revolution in Asia.
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  • - Rice (Oryza sativa L.) is a crucial global crop, and as the world population grows, there's a pressing need for sustainable agricultural practices which necessitate better understanding rice genetics via shared research resources.
  • - A significant rice insertional mutant population has been created using the japonica variety Tainung 67, comprising about 93,000 mutant lines, with a majority featuring phenomic and flanking sequence data.
  • - The Taiwan Rice Insertional Mutants Database allows researchers to search for phenotypes and integration sites, facilitating the identification of new genes and insights into the relationships among rice varieties, cultivation locations, and cropping seasons.
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Rice is a facultative short-day plant, and it requires a photoperiod shorter than the critical day length to get flowering. Sensitivity to photoperiod has been suggested as a major selection target in cultivated or weedy rice. The modern rice varieties in Taiwan may be cultivated twice a year.

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With the completion of the rice genome sequencing project, the next major challenge is the large-scale determination of gene function. A systematic phenotypic profiling of mutant collections will provide major insights into gene functions important for crop growth or production. Thus, detailed phenomics analysis is the key to functional genomics.

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