Publications by authors named "Chase-Topping M"

Neutropenia is a common chemotherapy-associated adverse event (AE) in dogs and a significant cause of decreased relative dose intensity. Dose reductions (DRs) and treatment delays (TDs) are frequently applied to decrease the risk of further neutropenic events (NEs) and AEs, but there is no standardised approach. The two main objectives of this retrospective study were to determine: (1) the failure rate of a 10% DR to prevent a subsequent inadequate absolute neutrophil count (ANC), defined as a nadir ANC <0.

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Transmissibility, the ability to spread within host populations, is a prerequisite for a pathogen to have epidemic or pandemic potential. Here, we estimate the phylogenies of human infectivity and transmissibility using 1,408 genome sequences from 743 distinct RNA virus species/types in 59 genera. By repeating this analysis using data sets censored by virus discovery date, we explore how temporal changes in the known diversity of RNA viruses-especially recent increases in recognized nonhuman viruses-have altered these phylogenies.

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O26 is the commonest non-O157 Shiga toxin ()-producing serogroup reported in human infections worldwide. Ruminants, particularly cattle, are the primary reservoir source for human infection. In this study, we compared the whole genomes and virulence profiles of O26:H11 strains ( = 99) isolated from Scottish cattle with strains from human infections ( = 96) held by the Scottish O157/STEC Reference Laboratory, isolated between 2002 and 2020.

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Background: Sars-CoV-2, the causative agent of COVID-19, has led to more than 226,000 deaths in the UK and multiple risk factors for mortality including age, sex and deprivation have been identified. This study aimed to identify which individual indicators of the Scottish Index of Multiple Deprivation (SIMD), an area-based deprivation index, were predictive of mortality.

Methods: This was a prospective cohort study of anonymised electronic health records of 710 consecutive patients hospitalised with Covid-19 disease between March and June 2020 in the Lothian Region of Southeast Scotland.

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  • Shiga toxin-producing E. coli (STEC) infections from wildlife are on the rise, with a notable instance in Scotland linked to venison in 2015 revealing gaps in knowledge about these pathogens.
  • A nationwide survey in Scotland found a low prevalence of STEC O157 in wild deer at 0.28%, but the bacteria were still found in high quantities in their feces and showed strong potential to cause human illness.
  • A follow-up investigation suggested that one particular wild deer sample may have contributed to a human outbreak in 2017, underscoring the need for strict food safety measures when handling venison.
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  • Over the past 20 years, the frequency of human infections caused by the E. coli strain O157 has been 2.5 times higher in Scotland compared to England and Wales.
  • A study combining cattle survey data and human clinical cases from 2014-2015 found that certain strains of O157 are more prevalent in Scottish cattle and humans, particularly the Stx2a+ strain PT21/28.
  • Whole genome sequencing revealed that most O157 diversity in human cases stemmed from cattle, with significant strain differences indicating localized transmission within Scotland.
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Background: Porcine reproductive and respiratory syndrome (PRRS) remains one of the most important infectious diseases for the pig industry. A novel small-scale transmission experiment was designed to assess whether the WUR0000125 (WUR for Wageningen University and Research) PRRS resilience single nucleotide polymorphism (SNP) confers lower susceptibility and infectivity to pigs under natural porcine reproductive and respiratory syndrome virus (PRRSV-2) transmission.

Methods: Commercial full- and half-sib piglets (n = 164) were assigned as either Inoculation, Shedder, or Contact pigs.

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Background: COVID-19 mortality risk factors have been established in large cohort studies; long-term mortality outcomes are less documented.

Methods: We performed multivariable logistic regression to identify factors associated with in-patient mortality and intensive care unit (ICU) admission in symptomatic COVID-19 patients admitted to hospitals in South-East Scotland from 1st March to 30th June 2020. One-year mortality was reviewed.

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Antimicrobial resistance (AMR) is a recognised threat to global health. Obtaining data on the prevalence of AMR in environmental bacteria is key to understanding drivers and routes of transmission. Here, 325 Shiga toxin negative deer faecal samples-gathered from across the Scottish mainland-were screened for the presence of AMR Escherichia coli and investigated for potential risk factors associated with AMR occurrence.

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Wild deer hunting is necessary in Scotland to control deer population density, with most carcasses being processed for human consumption. As limited information is available on the microbial condition of Scottish venison, we studied the variation of total coliforms and Escherichia coli (E. coli) on 214 wild deer carcasses collected from six approved establishments.

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Background: The variation in the pathogen type as well as the spatial heterogeneity of predictors make the generality of any associations with pathogen discovery debatable. Our previous work confirmed that the association of a group of predictors differed across different types of RNA viruses, yet there have been no previous comparisons of the specific predictors for RNA virus discovery in different regions. The aim of the current study was to close the gap by investigating whether predictors of discovery rates within three regions-the United States, China, and Africa-differ from one another and from those at the global level.

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  • Integrons are genetic elements that enhance the spread of antimicrobial resistance genes in bacteria, and this study focused on their prevalence in Scottish cattle across different farms.
  • Researchers analyzed fecal samples from 108 cattle herds and found high prevalence rates for class 1 and 2 integrons but did not detect class 3.
  • Factors influencing integron presence included seasonal effects, with spring showing higher positivity, and management practices like using natural spring water for cattle and housing conditions at sampling time.
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Countries of the World Health Organization (WHO) African Region have experienced a wide range of coronavirus disease 2019 (COVID-19) epidemics. This study aimed to identify predictors of the timing of the first COVID-19 case and the per capita mortality in WHO African Region countries during the first and second pandemic waves and to test for associations with the preparedness of health systems and government pandemic responses. Using a region-wide, country-based observational study, we found that the first case was detected earlier in countries with more urban populations, higher international connectivity and greater COVID-19 test capacity but later in island nations.

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Background: The antihelminthic drug praziquantel has been used as the drug of choice for treating schistosome infection for more than 40 years. Although some epidemiological studies have reported low praziquantel efficacy in cure rate (CR) and/or egg reduction rate (ERR), there is no consistent robust evidence of the development of schistosome resistance to praziquantel (PZQ). There is need to determine factors that lead to variable treatment CR and/or ERR.

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  • Cattle in Scotland serve as a reservoir for Shiga toxin-producing (STEC) pathogens, contributing to higher rates of STEC infections among humans compared to the European average.
  • A study collected and analyzed fecal samples from 110 herds, revealing varying herd-level prevalence rates for non-O157 serogroups O26, O103, O111, and O145, with O26 being the most common.
  • Seasonal and regional differences were noted, with higher prevalence of certain serogroups in the South West during autumn, and a lack of positive herds associated with Central Scotland and winter.
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Background: Carbapenemase-producing organisms (CPO) have been largely responsible for the extensive spread of carbapenem resistance, and their prevalence is increasing in many parts of the world.

Aim: To evaluate clinical and molecular epidemiology and mortality associated with CPO among patients.

Methods: All CPO from clinical and long-term healthcare surveillance cultures across Scotland in 2003-2017 were reviewed retrospectively.

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Objective: To determine risk factors for carbapenemase-producing organisms (CPOs) and to determine the prognostic impact of CPOs.

Design: A retrospective matched case-control study.

Patients: Inpatients across Scotland in 2010-2016 were included.

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RNA viruses are a leading cause of human infectious diseases and the prediction of where new RNA viruses are likely to be discovered is a significant public health concern. Here, we geocoded the first peer-reviewed reports of 223 human RNA viruses. Using a boosted regression tree model, we matched these virus data with 33 explanatory factors related to natural virus distribution and research effort to predict the probability of virus discovery across the globe in 2010-2019.

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In 2012, the World Health Organisation (WHO) set out a roadmap for eliminating schistosomiasis as a public health problem by 2025. To achieve this target, preschool-aged children (PSAC; aged 6 years and below) will need to be included in schistosomiasis treatment programmes. As the global community discusses the tools and approaches for treating this group, one of the main questions that remains unanswered is how to quantify infection in this age group to inform treatment strategies.

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Many livestock and human vaccines are leaky because they block symptoms but do not prevent infection or onward transmission. This leakiness is concerning because it increases vaccination coverage required to prevent disease spread and can promote evolution of increased pathogen virulence. Despite leakiness, vaccination may reduce pathogen load, affecting disease transmission dynamics.

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Vaccination is the main tool for controlling infectious diseases in livestock. Yet current vaccines only provide partial protection raising concerns about vaccine effectiveness in the field. Two successive transmission trials were performed involving 52 pigs to evaluate the effectiveness of a Porcine Reproductive and Respiratory Syndrome (PRRS) vaccinal strain candidate against horizontal transmission of a virulent heterologous strain.

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Background: Antimicrobial resistance (AMR) driven by antibiotic consumption is a growing global health threat. However, data on antimicrobial consumption patterns in low- and middle-income countries (LMICs) is sparse. Here, we investigate the patterns of antibiotic sales in humans and livestock in urban Nairobi, Kenya, and evaluate the level of awareness and common behaviours related to antibiotic use and AMR amongst human and veterinary pharmacists.

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  • * The study found high levels of resistance among E. coli isolates, with 47.6% of human and 21.1% of livestock samples resistant to multiple antibiotic classes, indicating a serious public health concern.
  • * Human AMR was linked to factors like human population density and livestock waste, while the act of keeping livestock alone had no substantial impact on human AMR levels.
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  • Systemic lupus erythematosus (SLE) is an autoimmune disease that affects mainly individuals of African descent, with current diagnostic criteria inadequately reflecting their specific patterns of disease presentation.
  • The study analyzed serum samples from 61 Black African SLE patients and 100 controls, finding a much higher rate of detectable autoantibodies in SLE patients (97%) compared to controls (15%), with notable reactivities against dsDNA and PCNA.
  • The research identified two distinct patient groups based on autoantibody profiles, suggesting that including anti-PCNA in diagnostics could improve the accuracy of SLE identification and understanding of its clinical manifestations in Black African populations.
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Background: Recent research has shown that in schistosome-endemic areas preschool-aged children (PSAC), that is, ≤5 years, are at risk of infection. However, there exists a knowledge gap on the dynamics of infection and morbidity in this age group. In this study, we determined the incidence and dynamics of the first urogenital schistosome infections, morbidity and treatment in PSAC.

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