Publications by authors named "Charles Nyagupe"

The Global Initiative on Sharing All Influenza Data, a public-access database for sharing severe acute respiratory syndrome coronavirus 2 genomic sequencing data, has received significantly less data from African countries compared to the global total. Furthermore, the contribution of these data was infrequent and, for some countries, non-existent. The primary aim of this review is to identify the technological barriers to routine genomic surveillance in Africa.

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Article Synopsis
  • Whole genome sequencing was utilized in Zimbabwe to analyze the SARS-CoV-2 outbreak and assess the effectiveness of public health measures between March and October 2020.* ! -
  • Out of 92,299 collected samples, 8099 tested positive for COVID-19, with 156 suitable for sequencing; the data revealed 26 independent virus introductions linked to 12 global variants, predominantly from outside Zimbabwe.* ! -
  • The study highlighted that initial public health measures successfully delayed community transmission of the virus, underscoring the importance of global sequencing data to track and manage the spread effectively.* !
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Background: In Zimbabwe, viral load (VL) testing for people living with HIV on antiretroviral therapy is performed at the National Microbiology Reference Laboratory using a NucliSens machine. Anecdotal evidence has shown that invalid graphs for "Target Not Detectable (TND)" will upon repeat VL testing produce a valid result for virus not detected, therefore removing the need to repeat the test. This needs formal assessment.

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While reporting human immunodeficiency virus (HIV) viral load (VL) using dried blood spot (DBS) in the BioMerieux NucliSENS platform, application of the hematocrit correction factor has been suggested. In this cross-sectional study from the National Microbiology Reference Laboratory of Zimbabwe, we assessed whether hematocrit correction (individual and/or mean) in DBS results improved the correlation with plasma VL and prediction of VL non-suppression (≥1000 copies per ml in plasma). Of 517 specimens during August-December 2018, 65(12.

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