Evaluation of Atopic Dermatitis Improvement Caused by Low-Level, Low-Frequency Pulsed Electromagnetic Fields.

This study aimed to evaluate the effectiveness of using low-level, low-frequency pulsed electromagnetic field (LLLF_PEMF) stimulation to improve atopic dermatitis induced by 2,4-dinitrochlorobenzene (DNCB). Twenty 6-week-old hairless mice were randomly divided into Normal (n = 5), PEMF 15 Hz (n = 5), PEMF 75 Hz (n = 5), and Sham (n = 5) groups. Following the onset of atopic dermatitis symptoms, PEMF groups (15 and 75 Hz) were stimulated with LLLF_PEMF (15 mT) for 8 h per day for 1 week.

Adjusting heterogeneous ascertainment bias for genetic association analysis with extended families.

Background: In family-based association analysis, each family is typically ascertained from a single proband, which renders the effects of ascertainment bias heterogeneous among family members. This is contrary to case-control studies, and may introduce sample or ascertainment bias. Statistical efficiency is affected by ascertainment bias, and careful adjustment can lead to substantial improvements in statistical power.

Efficient strategy for detecting gene × gene joint action and its application in schizophrenia.

We propose a new approach to detect gene × gene joint action in genome-wide association studies (GWASs) for case-control designs. This approach offers an exhaustive search for all two-way joint action (including, as a special case, single gene action) that is computationally feasible at the genome-wide level and has reasonable statistical power under most genetic models. We found that the presence of any gene × gene joint action may imply differences in three types of genetic components: the minor allele frequencies and the amounts of Hardy-Weinberg disequilibrium may differ between cases and controls, and between the two genetic loci the degree of linkage disequilibrium may differ between cases and controls.

Spatially modulated phase in the holographic description of quark-gluon plasma.

We present a string theory construction of a gravity dual of a spatially modulated phase. Our earlier work shows that the Chern-Simons term in the five-dimensional Maxwell theory destabilizes the Reissner-Nordström black holes in anti-de Sitter space if the Chern-Simons coupling is sufficiently high. In this Letter, we show that a similar instability is realized on the world volume of 8-branes in the Sakai-Sugimoto model in the quark-gluon plasma phase.

Sub-AQUA: real-value quality assessment of protein structure models.

Computational protein tertiary structure prediction has made significant progress over the past years. However, most of the existing structure prediction methods are not equipped with functionality to predict accuracy of constructed models. Knowing the accuracy of a structure model is crucial for its practical use since the accuracy determines potential applications of the model.

ESG: extended similarity group method for automated protein function prediction.

Motivation: Importance of accurate automatic protein function prediction is ever increasing in the face of a large number of newly sequenced genomes and proteomics data that are awaiting biological interpretation. Conventional methods have focused on high sequence similarity-based annotation transfer which relies on the concept of homology. However, many cases have been reported that simple transfer of function from top hits of a homology search causes erroneous annotation.

Threading without optimizing weighting factors for scoring function.

Optimizing weighting factors for a linear combination of terms in a scoring function is a crucial step for success in developing a threading algorithm. Usually weighting factors are optimized to yield the highest success rate on a training dataset, and the determined constant values for the weighting factors are used for any target sequence. Here we explore completely different approaches to handle weighting factors for a scoring function of threading.