Publications by authors named "Cenk O Gurdap"

Article Synopsis
  • Understanding nucleic acids' structure and function in their natural cellular environment is essential for structural biology, with in-cell NMR spectroscopy being a key method used to achieve this.
  • Challenges such as sample decay, low signal intensities, and RNA degradation hinder the effectiveness of in-cell NMR in human cell lines, limiting the structural information obtainable.
  • The study optimizes the detection of imino proton signals in HeLa cells using selective excitation, improving measurement speed and signal quality, and providing insights into the dynamics and structure of nucleic acids within cells.
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The glycosylation of cellular membranes is crucial for the survival and communication of cells. As our target is the engineering of the glycocalyx, we designed a functionalized lipid anchor for the introduction into cellular membranes called Functional Lipid Anchor for MEmbranes (FLAME). Since cholesterol incorporates very effectively into membranes, we developed a twice cholesterol-substituted anchor in a total synthesis by applying protecting group chemistry.

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Background: Because of their implications in several pathological conditions, α4β2* nicotinic acetylcholine receptors (nAChRs) are potential targets for the treatment of nicotine dependence, pain, and many psychiatric and neurodegenerative diseases. However, they exist in various subtypes, and finding selective tools to investigate them has proved challenging. The nicotinic receptor agonist, 5-iodo-A-85380 (5IA), has helped in delineating the function of β2-containing subtypes in vitro; however, much is still unknown about its behavioral effects.

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Article Synopsis
  • - The behavior of plasma membrane proteins is crucial for various cellular functions like movement and signaling, and this behavior is influenced by interactions with lipids and cytosolic components.
  • - This study explores how the size and glycosylation of the extracellular domain (ECD) of these proteins affect their dynamics in the lipid bilayer, revealing that larger or more glycosylated ECDs reduce protein mobility and organization in lipid domains.
  • - The findings connect the properties of ECDs to the initiation of cellular signaling, suggesting that ECD size can impact protein localization and movement within the plasma membrane.
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Solution NMR spectroscopy is a well-established tool with unique advantages for structural studies of RNA molecules. However, for large RNA sequences, the NMR resonances often overlap severely. A reliable way to perform resonance assignment and allow further analysis despite spectral crowding is the use of site-specific isotope labeling in sample preparation.

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Although liquid-liquid phase separation of cytoplasmic or nuclear components in cells has been a major focus in cell biology, it is only recently that the principle of phase separation has been a long-standing concept and extensively studied in biomembranes. Membrane phase separation has been reconstituted in simplified model systems, and its detailed physicochemical principles, including essential phase diagrams, have been extensively explored. These model membrane systems have proven very useful to study the heterogeneity in cellular membranes, however, concerns have been raised about how reliably they can represent native membranes.

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Chronic neuropathic pain is a burden to millions of patients every day. Patients with neuropathic pain will also experience acute pain throughout their everyday lives adding to their nociceptive burden. Using nociceptive models in mice this study aimed to investigate the relationship between acute visceral pain and chronic neuropathic pain in spontaneous and affective behaviors.

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