Publications by authors named "Cedric Le Caignec"

Article Synopsis
  • - The study examines how secondary genetic variants can influence the clinical features of individuals with primary disease-causing variants, suggesting that these modifiers play a significant role in disease expression.
  • - Specifically focusing on the 16p12.1 deletion, researchers identified various rare and common variants that predisposed individuals to specific developmental issues, such as neurological defects and microcephaly.
  • - By analyzing data from different cohorts, the findings indicate that the effects of primary and secondary variants on phenotype vary depending on the specific primary variant involved, highlighting the need for personalized approaches in treatment.
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We examined more than 97,000 families from four neurodevelopmental disease cohorts and the UK Biobank to identify phenotypic and genetic patterns in parents contributing to neurodevelopmental disease risk in children. We identified within- and cross-disorder correlations between six phenotypes in parents and children, such as obsessive-compulsive disorder (R = 0.32-0.

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  • - Cat Eye Syndrome (CES) is a rare genetic disorder linked to a marker chromosome from chromosome 22, leading to diverse symptoms including iris coloboma, anal atresia, and preauricular tags, but these are present in less than half of the cases.
  • - An international study of 43 CES patients found that only 16% displayed all three classic symptoms, while 9% showed none; additional issues such as cardiac anomalies (51%) and intellectual disabilities (47%) were also common.
  • - The study highlights the significance of supernumerary marker chromosomes (sSMC), found in 91% of cases, with many parents showing mild traits, emphasizing the need for genetic counseling regarding recurrence risks.
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We examined more than 38,000 spouse pairs from four neurodevelopmental disease cohorts and the UK Biobank to identify phenotypic and genetic patterns in parents associated with neurodevelopmental disease risk in children. We identified correlations between six phenotypes in parents and children, including correlations of clinical diagnoses such as obsessive-compulsive disorder (R=0.31-0.

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Article Synopsis
  • - The study focused on collecting and analyzing cases of fetuses with 7q11.23 copy number variations (CNVs), specifically Williams-Beuren syndrome (WBS) and 7q11.23 duplication, to enhance understanding of their prenatal features.
  • - Researchers gathered clinical and ultrasound data from 40 fetuses with WBS, finding that common issues included intra-uterine growth retardation (IUGR), cardiovascular defects, and other notable signs.
  • - The findings confirm that 7q11.23 CNVs lead to a variety of prenatal presentations, with IUGR and cardiovascular issues being the most prevalent, aiming to help identify distinctive signs in affected fetuses.
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  • Chromosome 1p36 deletion syndrome (1p36DS) is a common genetic disorder resulting from a deletion on the short arm of chromosome 1, affecting 1 in every 5,000 to 10,000 live births in the U.S.
  • The syndrome is characterized by a range of health issues including developmental delays, heart defects, and distinct facial features.
  • This study analyzed 86 patients in France to compare the incidence of 1p36DS with other syndromes and examined how deletion locations influence specific symptoms and overall management of the disorder.
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  • Embryonic development relies on precise DNA processes, and mutations in repair genes can cause neurodevelopmental disorders with symptoms like microcephaly and short stature.
  • Researchers identified genetic variants in SLF2 and SMC5 from the RAD18-SLF1/2-SMC5/6 pathway in patients with developmental issues, including abnormal chromosomes and anemia.
  • The new disorder, named Atelís Syndrome, demonstrates heightened replication stress and difficulties with specific DNA structures, emphasizing the crucial role of the SLF2-SMC5/6 pathway in preserving genome stability.
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  • A recent study focuses on patients with a microduplication in the 19p13.3 region, linked to issues like growth delays, small head size, and developmental delays.
  • The research analyzes a large cohort of 24 patients using advanced genomic techniques to better understand the genetic basis of this syndrome.
  • The study identifies a new critical region (CR 1) associated with the duplication, which affects gene interactions critical for normal developmental processes, particularly related to head size.
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  • Peters' anomaly (PA) is a rare eye condition marked by issues like corneal opacity and adhesions related to the eye's anterior segment, linked to several genes such as B3GLCT and PAX6.
  • Researchers studied 95 PA patients using advanced genetic techniques and found genetic defects in about one-third of them, with B3GLCT and PAX6 being the most common culprits.
  • Notably, they discovered SOX2, a gene associated with microphthalmia, in some PA patients, highlighting its unexpected role in this condition and the need for further genetic exploration in PA cases.
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Proteins involved in transcriptional regulation harbor a demonstrated enrichment of mutations in neurodevelopmental disorders. The Sin3 (Swi-independent 3)/histone deacetylase (HDAC) complex plays a central role in histone deacetylation and transcriptional repression. Among the two vertebrate paralogs encoding the Sin3 complex, SIN3A variants cause syndromic intellectual disability, but the clinical consequences of SIN3B haploinsufficiency in humans are uncharacterized.

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Interpretation of the significance of maternally inherited X chromosome variants in males with neurocognitive phenotypes continues to present a challenge to clinical geneticists and diagnostic laboratories. Here we report 14 males from 9 families with duplications at the Xq13.2-q13.

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Article Synopsis
  • - SOX6 is part of a group of genes that encode transcription factors critical for controlling cell behavior during development, with involvement in processes like neurogenesis and skeletogenesis.
  • - Research identified 19 individuals from 17 different families with various alterations in the SOX6 gene, all displaying developmental delays and intellectual disabilities, along with other possible features like ADHD and autism.
  • - The study found that different types of genetic variants in SOX6, including deletions and missense changes, lead to its inactivation, suggesting that a lack of SOX6 function is linked to a specific neurodevelopmental disorder, though no direct genotype-phenotype relationships were established.
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  • - Primrose syndrome involves various symptoms like intellectual deficiency, behavioral issues, distinctive facial features, progressive hearing loss, and muscle problems, all linked to mutations in the ZBTB20 gene, which is crucial for cognitive functions.
  • - A study examined 14 patients with different types of ZBTB20 mutations, revealing that those with missense variants had more severe symptoms, including more frequent hearing loss and specific complications like ectopic calcification.
  • - The research found common facial features in all patients and significant differences in age and health issues associated with the genetic variants, suggesting a need for further study to understand the progression of the condition, particularly in patients with deletions.
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  • Variants in ribosomal protein genes are linked to certain genetic disorders like Diamond-Blackfan anemia and congenital asplenia; this study focuses on RPL13's role in a rare bone dysplasia linked to severe short stature.
  • The research identifies one missense variant and three splice variants in RPL13, resulting in an insertion of 18 amino acids, yet no significant pre-rRNA processing issues were found in affected cells.
  • The data shows that RPL13 is crucial for bone development, as it's highly expressed in chondrocytes and osteoblasts, indicating its involvement in the translation dynamics affecting ribosome function in skeletal disorders.
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Article Synopsis
  • * Rare genetic abnormalities like duplications and rearrangements of HOXD genes can lead to mesomelic dysplasia, a condition affecting upper and lower limb formation.
  • * In two families with upper limb dysplasia, researchers discovered microduplications affecting HOXD genes, which likely disrupt gene regulation and contribute to the disease phenotype by misplacing a regulatory influence on specific HOXD genes.
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Article Synopsis
  • The 15q11.2 deletion is linked to neurodevelopmental disorders and its clinical implications are challenging due to confusing literature surrounding it.
  • This study aimed to determine the effect size of this deletion using meta-analysis of various case-control studies, revealing a decrease in IQ by 4.3 points among carriers.
  • The findings suggested that while the deletion has some association with disorders like intellectual disabilities and epilepsy, it is not significant enough to warrant discussion in clinical settings, as it mostly shows mild effects.
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Article Synopsis
  • The text refers to a correction made to a previously published article with the DOI 10.1038/s41525-017-0035-2.
  • The correction likely addresses errors or omissions in the original publication.
  • This ensures that readers have access to accurate and updated information related to the research discussed in the article.
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  • Uniparental disomy (UPD) testing is advised during pregnancy for fetuses with balanced Robertsonian translocations involving chromosomes 14 or 15, which have a low estimated risk of ~0.6-0.8% for UPD.
  • A multicenter study involving 1,747 UPD tests revealed only one case of UPD(14) linked to a maternally inherited translocation, indicating a much lower risk than previously thought.
  • The updated estimated risk of UPD in these cases is about 0.06%, and since the risk of miscarriage from invasive testing is higher, prenatal UPD testing is not recommended, and parents can be reassured.
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In the Acknowledgements section of the paper the authors neglected to mention that the study was supported by a grant from the National Human Genome Research Institute (NHGRI) UM1HG007301 (S.H., M.

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  • Human retrocopies, which are RNA transcripts that use specific genetic machinery for retrotransposition, can impact genomic testing accuracy due to potential misinterpretation by next-generation sequencing (NGS) techniques.
  • In a study, eight cases of retrocopies were identified during diagnostic NGS analyses, revealing discrepancies in how read alignments indicated copy number gains and intron-exon junctions were affected.
  • The authors stress the importance of recognizing retrocopies during genetic testing to improve detection strategies and avoid common misunderstandings in genomic analysis.
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Lethal lung developmental disorders are a rare but important group of pediatric diffuse lung diseases presenting with neonatal respiratory failure. On the basis of histopathological appearance at lung biopsy or autopsy, they have been termed: alveolar capillary dysplasia with misalignment of the pulmonary veins, acinar dysplasia, congenital alveolar dysplasia, and other unspecified primary pulmonary hypoplasias. However, the histopathological continuum in these lethal developmental disorders has made accurate diagnosis challenging, which has implications for recurrence risk.

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Purpose: Mediator is a multiprotein complex that allows the transfer of genetic information from DNA binding proteins to the RNA polymerase II during transcription initiation. MED12L is a subunit of the kinase module, which is one of the four subcomplexes of the mediator complex. Other subunits of the kinase module have been already implicated in intellectual disability, namely MED12, MED13L, MED13, and CDK19.

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Microphthalmia with brain and digital anomalies (MCOPS6, MIM# 607932) is an autosomal dominant disorder caused by loss-of-function variants or large deletions involving BMP4, which encodes bone morphogenetic protein 4, a member of the TGF-β protein superfamily. BMP4 has a number of roles in embryonic development including neurogenesis, lens induction, development of cartilage and bone, urogenital development, limb and digit patterning, hair follicle regeneration, as well as tooth formation. In addition to syndromic microphthalmia, BMP4 variants have been implicated in non-syndromic cleft lip with or without cleft palate and congenital healed cleft lip indicating different allelic presentations.

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Article Synopsis
  • A study investigated balanced chromosomal rearrangements in patients with intellectual disabilities and congenital anomalies using next-generation sequencing to identify breakpoints at a molecular level.
  • The research characterized breakpoints in 55 patients, revealing that 89% of chromosomal rearrangements were detected, with non-homologous end-joining identified as the primary repair mechanism.
  • The study found that a diagnosis could be established in about 44.8% of patients, revealing disruptions in genes and suggesting that paired-end whole genome sequencing is effective for clinical applications in structural variation analysis.
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This report presents two families with interstitial 11q24.2q24.3 deletion, associated with malformations, hematologic features, and typical facial dysmorphism, observed in Jacobsen syndrome (JS), except for intellectual disability (ID).

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