Publications by authors named "Carney S"

Brain tumors in children and adults differ greatly in patient outcomes and responses to radiotherapy and chemotherapy. Moreover, the prevalence of recurrent mutations in histones and chromatin regulatory proteins in pediatric and young adult gliomas suggests that the chromatin landscape is rewired to support oncogenic programs. These early somatic mutations dysregulate widespread genomic loci by altering the distribution of histone post-translational modifications (PTMs) and, in consequence, causing changes in chromatin accessibility and in the histone code, leading to gene transcriptional changes.

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Diarrhoeal disease caused by Cryptosporidium is a major cause of morbidity and mortality in young and malnourished children from low- and middle-income countries, with no vaccine or effective treatment. Here we describe the discovery of EDI048, a Cryptosporidium PI(4)K inhibitor, designed to be active at the infection site in the gastrointestinal tract and undergo rapid metabolism in the liver. By using mutational analysis and crystal structure, we show that EDI048 binds to highly conserved amino acid residues in the ATP-binding site.

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Article Synopsis
  • Mutant isocitrate dehydrogenase 1 (mIDH1) creates excess 2-hydroxyglutarate (2HG), leading to changes in gene expression and making mIDH1 gliomas more resilient to DNA damage and radiation.* -
  • Research found mIDH1 glioma cells showed reduced mitochondrial metabolism and increased autophagy, which became their main energy source, indicating they rely heavily on autophagy for survival.* -
  • Blocking autophagy weakened the growth of mIDH1 glioma cells and, when combined with radiation, enhanced treatment effectiveness, suggesting targeting autophagy could improve therapies for mIDH1 glioma patients.*
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Nonhomologous end joining (NHEJ), the primary pathway of vertebrate DNA double-strand-break (DSB) repair, directly re-ligates broken DNA ends. Damaged DSB ends that cannot be immediately re-ligated are modified by NHEJ processing enzymes, including error-prone polymerases and nucleases, to enable ligation. However, DSB ends that are initially compatible for re-ligation are typically joined without end processing.

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Liquid-liquid phase separation is key to understanding aqueous two-phase systems (ATPS) arising throughout cell biology, medical science, and the pharmaceutical industry. Controlling the detailed morphology of phase-separating compound droplets leads to new technologies for efficient single-cell analysis, targeted drug delivery, and effective cell scaffolds for wound healing. We present a computational model of liquid-liquid phase separation relevant to recent laboratory experiments with gelatin-polyethylene glycol mixtures.

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Reflective practice is a core component of Infant Mental Health (IMH) training and work in the form of reflective supervision/consultation (RS/C). RS/C supports and facilitates relationship-based practice, and is considered to help prevent burnout and promote work satisfaction. In response to an identified gap in empirical research on RS/C, this scoping review aimed to give an overview of the broad range of study designs and outcomes by systematically charting empirical studies on RS/C in IMH-based work with children and families.

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Purpose: Mutant isocitrate dehydrogenase 1 (mIDH1) alters the epigenetic regulation of chromatin, leading to a hypermethylation phenotype in adult glioma. This work focuses on identifying gene targets epigenetically dysregulated by mIDH1 to confer therapeutic resistance to ionizing radiation (IR).

Experimental Design: We evaluated changes in the transcriptome and epigenome in a radioresistant mIDH1 patient-derived glioma cell culture (GCC) following treatment with an mIDH1-specific inhibitor, AGI-5198.

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In this article we develop an algorithm for the efficient simulation of electrolytes in the presence of physical boundaries. In previous work the discrete ion stochastic continuum overdamped solvent (DISCOS) algorithm was derived for triply periodic domains, and was validated through ion-ion pair correlation functions and Debye-Hückel-Onsager theory for conductivity, including the Wien effect for strong electric fields. In extending this approach to include an accurate treatment of physical boundaries we must address several important issues.

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Article Synopsis
  • * Research showed that these mutations lead to reduced DNA repair, making tumors more vulnerable to DNA damage, which activates immune responses through the cGAS/STING pathway.
  • * Treatment combining radiotherapy and DNA damage response inhibitors improved survival rates in mice with H3.3-G34R pHGG, and adding a STING agonist further enhanced the effectiveness, promoting immune memory against the cancer.
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Glioblastoma (GBM) is an aggressive primary brain cancer, with a 5 year survival of ∼5%. Challenges that hamper GBM therapeutic efficacy include (i) tumor heterogeneity, (ii) treatment resistance, (iii) immunosuppressive tumor microenvironment (TME), and (iv) the blood-brain barrier (BBB). The C-X-C motif chemokine ligand-12/C-X-C motif chemokine receptor-4 (CXCL12/CXCR4) signaling pathway is activated in GBM and is associated with tumor progression.

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Introduction: Smoking cessation integration within lung cancer screening programs is challenging. Currently, phone counselling is available across Canada for individuals referred by healthcare workers and by self-referral. We compared quit rates after phone counselling interventions between participants who self-refer, those referred by healthcare workers, and those referred by a lung cancer screening program.

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Background: Informatics tools within electronic health records (EHRs)-for example, data rosters and clinical reminders-can help disseminate care guidelines into clinical practice. Such tools' adoption varies widely, however, possibly because many primary care providers receive minimal training in even basic EHR functions.

Objectives: This mixed-methods evaluation of a pilot training program sought to identify factors to consider when providing EHR use optimization training in community health centers (CHCs) as a step toward supporting CHC providers' adoption of EHR tools.

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UvrD, a model for non-hexameric Superfamily 1 helicases, utilizes ATP hydrolysis to translocate stepwise along single-stranded DNA and unwind the duplex. Previous estimates of its step size have been indirect, and a consensus on its stepping mechanism is lacking. To dissect the mechanism underlying DNA unwinding, we use optical tweezers to measure directly the stepping behavior of UvrD as it processes a DNA hairpin and show that UvrD exhibits a variable step size averaging ~3 base pairs.

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Mutant isocitrate-dehydrogenase 1 () synthesizes the oncometabolite 2-hydroxyglutarate (2HG), which elicits epigenetic reprogramming of the glioma cells’ transcriptome by inhibiting DNA and histone demethylases. We show that the efficacy of immune-stimulatory gene therapy (TK/Flt3L) is enhanced in gliomas, due to the reprogramming of the myeloid cells’ compartment infiltrating the tumor microenvironment (TME). We uncovered that the immature myeloid cells infiltrating the TME are mainly nonsuppressive neutrophils and preneutrophils.

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Article Synopsis
  • Elastic fibers, crucial for tissue flexibility, struggle to regenerate in proteolytic disorders like abdominal aortic aneurysms, compromising tissue health.
  • Research shows that using small interfering RNA (siRNA) can enhance the assembly and maturation of these fibers in damaged smooth muscle cells, outperforming untreated cultures.
  • The study identifies effective siRNA delivery methods and dosing that improve the rebuilding of the elastic matrix, potentially leading to new therapies for tissue disorders that disrupt elastic fiber integrity.
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  • The study focuses on the prevalence and characteristics of cleft-like indentations (CLIs) in the mitral valve of patients with hypertrophic cardiomyopathy (HCM), using three-dimensional transesophageal echocardiography (TEE) for evaluation.
  • Out of 90 HCM patients, 93.3% showed at least one CLI, significantly higher than 39% in the control group of patients undergoing non-mitral valve surgeries, with a notable increase in the presence of deep and multiple CLIs in the HCM group.
  • Despite the high prevalence of CLIs in HCM patients, the study concluded that these features did not impact the severity of mitral regurg
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High grade gliomas are malignant brain tumors that arise in the central nervous system, in patients of all ages. Currently, the standard of care, entailing surgery and chemo radiation, exhibits a survival rate of 14-17 months. Thus, there is an urgent need to develop new therapeutic strategies for these malignant brain tumors.

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Article Synopsis
  • Gliomas, particularly glioblastomas (GBM), are highly aggressive brain cancers, making up about 80% of central nervous system malignancies, with a median survival of less than 15 months for patients.
  • Recent studies have identified crucial genetic factors such as mutations and methylation patterns that affect glioma classification and correlate with patient prognosis.
  • The tumor microenvironment in gliomas fosters inflammation, immune suppression, and changes to the blood-brain barrier, which can worsen tumor progression and present new challenges for treatment.
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Glioblastoma (GBM) is the most common and aggressive primary brain tumor in the adult population and it carries a dismal prognosis. Inefficient drug delivery across the blood brain barrier (BBB), an immunosuppressive tumor microenvironment (TME) and development of drug resistance are key barriers to successful glioma treatment. Since gliomas occur through sequential acquisition of genetic alterations, gene therapy, which enables to modification of the genetic make-up of target cells, appears to be a promising approach to overcome the obstacles encountered by current therapeutic strategies.

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  • IDH1-R132H mutation is common in adult gliomas and is associated with specific genetic characteristics, such as mutations in TP53 and ATRX.
  • Inhibiting the metabolite D-2HG from this mutation improves survival in glioma-bearing mice and enhances the immune response against tumors.
  • Combining D-2HG inhibition with radiation, chemotherapy (temozolomide), and anti-PDL1 therapy showed promising results, leading to complete tumor regression in a significant percentage of mice, suggesting a potential new treatment strategy for certain glioma patients.
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Non-homologous end joining (NHEJ) is the predominant pathway that repairs DNA double-strand breaks in vertebrates. During NHEJ DNA ends are held together by a multi-protein synaptic complex until they are ligated. Here, we use egg extract to investigate the role of the intrinsically disordered C-terminal tail of the XRCC4-like factor (XLF), a critical factor in end synapsis.

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Studies have suggested that abrogated expression of detoxification enzymes, UGT2B15 and UGT2B17, are associated with prostate tumour risk and progression. We investigated the role of EGF on the expression of these enzymes since it interacts with signalling pathways to also affect prostate tumour progression and is additionally associated with decreased DNA methylation. The expression of , methyltransferases, and was assessed in prostate cancer cells (LNCaP) treated with EGF, an EGFR inhibitor PD16893, and the methyltransferase inhibitor, 5-azacytidine, respectively.

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