Publications by authors named "Carmen Mata-Martin"

This work aimed to analyse the pharmacogenetic information in the Spanish Drug Regulatory Agency (AEMPS) Summary of Products Characteristics (SmPC), evaluating the presence of pharmacogenetic biomarkers, as well as the associated recommendations. A total of 55.4% of the 1891 drug labels reviewed included information on pharmacogenetic biomarker(s).

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Methotrexate (MTX) is a commonly used drug for the treatment of rheumatoid arthritis (RA), but its effectiveness can vary greatly among patients. Pharmacogenetics, the study of how genetic variations can affect drug response, has the potential to improve the personalized treatment of RA by identifying genetic markers that can predict a patient's response to MTX. However, the field of MTX pharmacogenetics is still in its early stages and there is a lack of consistency among studies.

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Duplication of the bacterial nucleoid is necessary for cell division hence specific arrest of DNA replication inhibits divisions culminating in filamentation, nucleoid dispersion and appearance of a-nucleated cells. It is demonstrated here that during the first 10 min however, enhanced residual divisions: the proportion of constricted cells doubled (to 40%), nucleoids contracted and cells remodelled dimensions: length decreased and width increased. The preliminary data provides further support to the existence of temporal and spatial couplings between the nucleoid/replisome and the sacculus/divisome, and is consistent with the idea that bacillary bacteria modulate width during the division process exclusively.

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Superresolution imaging technology has contributed to our understanding of the subnucleoid organization in E. coli cells. Multicolor superresolution images revealing "bacterial nucleolus-like structure or organization," "nucleolus-like compartmentalization of the transcription factories," and "spatial segregation of the transcription and replication machineries" have enhanced our understanding of the dynamic landscape of the bacterial chromatin.

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Article Synopsis
  • RNAP molecules in fast-growing bacterial cells cluster at ribosomal RNA operons, forming foci that resemble a eukaryotic nucleolus and serve as sites for rRNA synthesis.
  • A mutation reducing rRNA operons results in the loss of these foci and leads to an uncompacted nucleoid, indicating that multiple rRNA operons are essential for nucleoid organization.
  • Experiments using 3D superresolution microscopy showed that in certain mutant strains, extrachromosomal nucleolus-like structures help condense the nucleoid, suggesting that transcriptional activity in these structures plays a key role in maintaining nucleoid compaction.
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  • We've gained significant insights into RNA polymerase and transcription factors in prokaryotes but understanding their 3D organization within bacterial chromosomes is still developing.
  • Advances using superresolution imaging in fast-growing E. coli have highlighted spatial organization similarities between bacterial and eukaryotic transcription machinery, especially for rRNA genes.
  • RNA polymerase clusters, resembling eukaryotic nucleoli, serve as active sites for rRNA expression and ribosome production while ensuring that transcription and replication processes are spatially separated to prevent conflicts.
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Thymineless death (TLD), a phenomenon in which thymine auxotrophy becomes lethal when cells are starved of thymine, can be prevented by the presence of rifampicin, an RNA polymerase inhibitor. Several lines of evidence link TLD to chromosome initiation events. This suggests that rifampicin-mediated TLD suppression could be due to the inhibition of RNA synthesis required for DNA chromosomal initiation at oriC, although other mechanisms cannot be discarded.

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  • The thermo-sensitive ribonucleotide reductase RNR101 in E. coli, associated with the nrdA101 allele, shows a prolonged thermo-resistant period at 42°C, leading to a 45% increase in DNA content.
  • Impaired fork progression in the nrdA101 mutant suggests that fewer replication rounds and a drop in the oriC/terC ratio at 30°C may improve thermo-resistance by avoiding detrimental effects on cell division and viability at higher temperatures.
  • The findings indicate that the relationship between replication initiation frequency and fork progression is critical for efficient cell cycle regulation, potentially impacting replication processes in various systems.
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Thymine deprivation results in the loss of viability in cells from bacteria to eukaryotes. Numerous studies have identified a variety of molecular processes and cellular responses associated with thymineless death (TLD). It has been observed that TLD occurs in actively growing cells, and DNA damage and DNA recombination structures have been associated with cells undergoing TLD.

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