Publications by authors named "Caitlin Carlson"

Article Synopsis
  • The human skin microbiome acts as a protective barrier against pathogens by producing antimicrobial substances, making it a valuable resource for discovering new natural products.
  • Researchers introduced the EPithelial Isolate Collection (EPIC), which comprises 980 diverse bacterial strains from human skin across eight body sites, including many rare strains with unique biosynthetic gene clusters (BGCs).
  • Through extensive testing, they found that this microbiome exhibits strong antifungal properties, with certain body sites showing higher potential for discovering new bioactive compounds, leading to advancements in antimicrobial drug development and microbiome research.
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The oral microbiome has been understudied as a reservoir for clinical pathogens, including drug-resistant strains. Understanding how alterations in microbiome functioning render this site vulnerable to colonization is essential, as multidrug-resistant organisms (MDRO) carriage is a major risk factor for developing serious infections. To advance our knowledge of oral MDRO carriage and protection against pathogen colonization conferred by native microbiota, we examined microbiomes from individuals colonized by MDROs (n=33) and non-colonized age-matched controls (n=30).

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Fungi shape the diversity of life. Characterizing the evolution of fungi is critical to understanding symbiotic associations across kingdoms. In this study, we investigate the genomic and metabolomic diversity of the genus , a specialized parasite of fungus-growing ant gardens.

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Although calcareous anatomical structures have evolved in diverse animal groups, such structures have been unknown in insects. Here, we report the discovery of high-magnesium calcite [CaMg(CO)] armor overlaying the exoskeletons of major workers of the leaf-cutter ant Acromyrmex echinatior. Live-rearing and in vitro synthesis experiments indicate that the biomineral layer accumulates rapidly as ant workers mature, that the layer is continuously distributed, covering nearly the entire integument, and that the ant epicuticle catalyzes biomineral nucleation and growth.

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Article Synopsis
  • Symbiotic microbes, particularly actinobacteria, help insects like ambrosia beetles by providing nutrients and defense against parasites.
  • Researchers identified a specific actinobacterial strain (XylebKG-1) that consistently appears in nests of two ambrosia beetle species, showing strong inhibitory effects on a fungal antagonist while leaving the mutualistic fungus unharmed.
  • The actinobacterium XylebKG-1 produces cycloheximide, a compound that may play a key defensive role by targeting harmful fungi, indicating its potential importance in the beetles' ecological interactions.
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The study of interactions between microorganisms has led to numerous discoveries, from novel antimicrobials to insights in microbial ecology. Many approaches used for the study of microbial interactions require specialized equipment and are expensive and time intensive. This paper presents a protocol for co-culture interaction assays that are inexpensive, scalable to large sample numbers, and easily adaptable to numerous experimental designs.

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Teeming within pollen provisions are diverse communities of symbiotic microbes, which provide a variety of benefits to bees. Microbes themselves may represent a major dietary resource for developing bee larvae. Despite their apparent importance in sustaining bee health, evidence linking pollen-borne microbes to larval health is currently lacking.

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Antimicrobial resistance is a global health crisis and few novel antimicrobials have been discovered in recent decades. Natural products, particularly from Streptomyces, are the source of most antimicrobials, yet discovery campaigns focusing on Streptomyces from the soil largely rediscover known compounds. Investigation of understudied and symbiotic sources has seen some success, yet no studies have systematically explored microbiomes for antimicrobials.

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Resources available in the human nasal cavity are limited. Therefore, to successfully colonize the nasal cavity, bacteria must compete for scarce nutrients. Competition may occur directly through interference (e.

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Although solitary bees provide crucial pollination services for wild and managed crops, this species-rich group has been largely overlooked in pesticide regulation studies. The risk of exposure to fungicide residues is likely to be especially high if the spray occurs on, or near host plants while the bees are collecting pollen to provision their nests. For species of Osmia that consume pollen from a select group of plants (oligolecty), the inability to use pollen from non-host plants can increase their risk factor for fungicide-related toxicity.

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