Structure determines the properties. However, whether electronic structure determines geometry or geometry determines electronic structure seems a philosophical question in a chicken and egg situation, which remains unclear. In this work, by applying density functional theory (DFT) and DMRG(4,4)-CASSCF methods, theoretical investigation suggested that the dual antiaromaticity in cyclo[2]carbons with even should be attributed to the electron correlation effect, instead of decreased geometric symmetry, which actually exists in all cyclo[2]carbon molecules and does not point out the essence.
View Article and Find Full Text PDFJ Chem Theory Comput
May 2024
The Python-based program, XMECP, is developed for realizing robust, efficient, and state-of-the-art minimum energy crossing point (MECP) optimization in multiscale complex systems. This article introduces the basic capabilities of the XMECP program by theoretically investigating the MECP mechanism of several example systems including (1) the photosensitization mechanism of benzophenone, (2) photoinduced proton-coupled electron transfer in the cytosine-guanine base pair in DNA, (3) the spin-flip process in oxygen activation catalyzed by an iron-containing 2-oxoglutarate-dependent oxygenase (Fe/2OGX), and (4) the photochemical pathway of flavoprotein adjusted by the intensity of an external electric field. MECPs related to multistate reaction and multistate reactivity in large-scale complex biochemical systems can be well-treated by workflows suggested by the XMECP program.
View Article and Find Full Text PDFThe present study investigates the standard model of [1,2]-fluorine migration and that triggered by the rearrangement of cyclopropyl-substituted fluoroepoxides. The [1,2]-fluorine migration reaction proceeds a synchronous concerted, tight-ion-pair mechanism. When coupled with other reaction coordinates, the whole reaction follows an asynchronous mechanism, while the [1,2]-fluorince migration unit still retains its tight-ion-pair feature and the reaction coordinates of two C-F distances vary synchronously.
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