Publications by authors named "Caecilie Benckendorff"

Nucleoside analogs have proven highly successful in many pharmaceutical intervention strategies, and continued exploration of next generation structural motifs is required. Herein we discuss recent advances toward the chemical synthesis of heteroatom-modified nucleosides, where this is constituted by the chalcogens sulfur or selenium. Paying specific focus to the organic chemistry to incorporate these heteroatoms, we consider developments toward ribose ring oxygen and ring carbon replacements alongside chalcogen-modified heterobases.

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Article Synopsis
  • Nucleoside and nucleotide analogues, particularly those with a sulfur atom replacing the ribose oxygen, show promise in treating viral infections and cancer.
  • A new method combines biocatalytic nucleobase diversification and chemical functionalization to create a wide variety of nucleoside analogues from 4'-thiouridine.
  • The approach successfully produced 5-iodo-4'-thiouridine enzymatically and led to a novel nucleoside analogue probe, 5-ethynyl-4'-thiouridine, which can monitor RNA synthesis in HeLa cells as a new tool for metabolic RNA labeling.
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Article Synopsis
  • Nucleoside analogues are key pharmaceuticals used in cancer and viral infection treatment, but none are currently used for bacterial infections, despite some having antibiotic properties.
  • The rise in antibiotic resistance creates an urgent need for new antibiotics, and natural product-derived nucleoside analogues could offer new therapeutic options.
  • This overview highlights recent advancements from 2019 to 2023 in developing natural purine nucleoside antibiotics by combining synthetic chemistry, biosynthetic knowledge, and recombinant enzyme applications.
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Starting from a commercially available thioether, we report a nine-step synthesis of a 4'-thiouridine phosphoramidite building-block. We install the uracil nucleobase using Pummerer-type glycosylation of a sulfoxide intermediate followed by a series of protecting group manipulations to deliver the desired phosphite. Notably, we introduce a 3',5'-O-di-tert-butylsilylene protecting group within a 4'-thiosugar framework, harnessing this to ensure regiospecific installation of the 2'-O-silyl protecting group.

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Analogues of the canonical nucleosides have a longstanding presence and proven capability within medicinal chemistry and drug discovery research. The synthesis reported herein successfully replaces furanose oxygen with CF and CHF in pyrimidine nucleosides, granting access to an alternative pharmacophore space. Key diastereoselective conjugate addition and fluorination methodologies are developed from chiral pool materials, establishing a robust gram-scale synthesis of 6'-()-monofluoro- and 6'--difluorouridines.

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Nucleoside analogues have proven to be highly successful chemotherapeutic agents in the treatment of a wide variety of cancers. Several such compounds, including gemcitabine and cytarabine, are the go-to option in first-line treatments. However, these materials do have limitations and the development of next generation compounds remains a topic of significant interest and necessity.

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