Automated estimation of leaf area development in sweet pepper plants from image analysis.

High-throughput automated plant phenotyping has recently received a lot of attention. Leaf area is an important characteristic in understanding plant performance, but time-consuming and destructive to measure accurately. In this research, we describe a method to use a histogram of image intensities to automatically measure plant leaf area of tall pepper (Capsicum annuum L.

SPICY: towards automated phenotyping of large pepper plants in the greenhouse.

Most high-throughput systems for automated plant phenotyping involve a fixed recording cabinet to which plants are transported. However, important greenhouse plants like pepper are too tall to be transported. In this research we developed a system to automatically measure plant characteristics of tall pepper plants in the greenhouse.

Assessing beef carcass tissue weights using computed tomography spirals of primal cuts.

More than 800 beef primal cuts from 44 Aberdeen Angus and Limousin-cross steers carcasses were scanned using spiral computed tomography (CT) and dissected. Thresholds for the segmentation of fat, muscle and bone in the CT spirals were estimated with the objective of assessing the weight of these tissues in the primal cuts and in the entire carcasses. Thresholds were estimated using half of the dataset (DBE) and then validated in the other half (DBV).

Efficiency of functional regression estimators for combining multiple laser scans of cDNA microarrays.

The first stage in the analysis of cDNA microarray data is estimation of the level of expression of each gene, from laser scans of hybridised microarrays. Typically, data are used from a single scan, although, if multiple scans are available, there is the opportunity to reduce sampling error by using all of them. Combining multiple laser scans can be formulated as multivariate functional regression through the origin.

Estimation of expression levels in spotted microarrays with saturated pixels.

Digital images obtained by the laser scanning of spotted microarrays often include saturated pixel values. These arise when the scan settings are sufficiently high and some pixels exceed the limit L=65535 and are instead set to L. Failure to adjust for this censoring leads to biased estimates of gene expression levels.